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Name : copB (JDM1_2696) Accession : YP_003064279.1 Strain : Lactobacillus plantarum JDM1 Genome accession: NC_012984 Putative virulence/resistance : Resistance Product : copper transporting ATPase Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2217 EC number : - Position : 2902621 - 2904660 bp Length : 2040 bp Strand : - Note : - DNA sequence : ATGAAAGACATGGATATGCAACACATGGCGCACCATGATTCAAATGACATGGGCGATATGGATATGGGTAACGGTGAGAT GATGCACATGGGCAATCTCAAGTTGAAGTTTTGGGTAGCATTAGTTCTGATGATTCCGATTATCATTATGAGTCCGATGA TGGGGGTCAATTTACCATTTCAAATCGTTTTTCGGCCATGGTCCGATTATATCGTCGCAATTTTGGGCACGATCCTGTTT CTATACGGTGGGCAACCGTTTTTCAGTGGTGCCAAGGCGGAGGTCAAGAATCATAAGCCTGCCATGATGACGTTGATTAC AATGGGTATCAGTGTGGCGTACGTTTACAGTATCTATGCTGTGGTTGCCAATGACTTGTTAAATGCAAAACCAATGGTGA CCGATTTCTTCTGGGAACTAGCGACTTTGATCGTCATCATGTTGTTAGGCCACTGGATCGAGATGAATACGGTCATGAAT GCGGGATCGGCGGTAGATAAACTAGCAAAACTGTTACCAAGTACGGCACATAAGTTAGTTGATGGGCAGGTCCATGACGT GGCAATTGCTGATCTGGCTAATGGTGATCAAGTTCAGGTCCGGGCTGGTGAACAAATTCCAGCTGACGGCACAGTGTTAA ATGGTGCGACTAGTGTGAATGAAGCGATGGTTACTGGTGAAGCTAAGTTAGTTGAAAAACGCGCTAAGGATCAAGTTGTG GGTGGTTCAGTCAATGGTGATGGGACGTTTGAGATGCAAGTCACCGGGACTGGTGAATCCGGATACTTAGCCCAAGTCAT GAAGTTAGTCAGTGACGCACAGGCGGCCAAATCGTCGCAAGAAAATATGGCGGATAAAGTGGCCGGACTCTTGTTCTACG CTGCCTTGACCGTTGCAATCGTTGCCTTTATCGTCTGGTTACTCGTGGGCAATCTGGCGTTAGCACTATCAATTGCGGTG ACAGTGCTCGTGATTGCTTGTCCTCACGCTTTAGGATTGGCAATTCCATTGGTAGTGGCACGGAGTACGGCGATTGCGGC CAGCCACGGGTTACTGATTCGTAATCGGGATGCGATGGAACAAGTCAAAAAGTTGAACTACGCGTTGATGGATAAGACCG GGACATTGACAGCTGGTAACTTTAAGGTCGCTGATTATCAAAGTAGCGCCGACCGGCTAACTGCGGACGCAGTCTTGGCG ATGATGGCCGGTTTGGAAAATGGCTCTAGTCATCCCTTAGCTGTCGGAATTCTTGCTGCCGCTAAGGAACATCAGTTAAC CCCTAAGGTTAGTCAGGATGTTCATCAGATTACTGGTGTCGGGTTAAACGGCACGATTGATGGGCAGACGTATCAGATCG TTTCGGCAGCTTACTTGGATAAACAAAATTTAGCCTATGACCAGCAAACGTTCAATCGACTGGCAAGTGCCGGTAACTCA GTCAGTTTTTTGATTCAGGAGCAGACAGTCTTAGGTTTTGTCGCTCAGGGTGACCAGATCAAGCCGGAAGCCAAGAACTT GATCGATAGTTTGAAGGCCCAAAACATTACCCCAGTAATGCTAACCGGTGATAATCCGCAGAGCGCCCAAGTCGTTGCTA AGCAGCTCGGAATTACAGAAGTGCATGCGGGTTTATTGCCTGAAGATAAGGCTAAGCTCGTTCAACAGTATCAGGCTGAT GGTAGCCACGTTATGATGATTGGCGATGGTGTTAACGATGCCCCTAGTCTGGCCCGGGCAGATATTGGCGTTGCCATTGG GTCTGGGACTGACGTTGCTATTGATTCTGCTGATATCGTTCTCGTTAAGAGTAATCCAAATGATGTGGTCGATTTCTTGG CTCTGGCCCGGCGAACGACCCGGAAGATGGCGCAAAATTTATGGTGGGGTGCTGGATACAATGTCATCACAATCCCCTTG GCTGCTGGTATTCTCGCACCACTCGGCTTTATTTTGAACCCGATGTTTGGTGCGGTAGTGATGTCATTAAGCACGGTAAT CGTGGCAATTAATGCGATGACGTTACGATTAAAAGACTAA Protein sequence : MKDMDMQHMAHHDSNDMGDMDMGNGEMMHMGNLKLKFWVALVLMIPIIIMSPMMGVNLPFQIVFRPWSDYIVAILGTILF LYGGQPFFSGAKAEVKNHKPAMMTLITMGISVAYVYSIYAVVANDLLNAKPMVTDFFWELATLIVIMLLGHWIEMNTVMN AGSAVDKLAKLLPSTAHKLVDGQVHDVAIADLANGDQVQVRAGEQIPADGTVLNGATSVNEAMVTGEAKLVEKRAKDQVV GGSVNGDGTFEMQVTGTGESGYLAQVMKLVSDAQAAKSSQENMADKVAGLLFYAALTVAIVAFIVWLLVGNLALALSIAV TVLVIACPHALGLAIPLVVARSTAIAASHGLLIRNRDAMEQVKKLNYALMDKTGTLTAGNFKVADYQSSADRLTADAVLA MMAGLENGSSHPLAVGILAAAKEHQLTPKVSQDVHQITGVGLNGTIDGQTYQIVSAAYLDKQNLAYDQQTFNRLASAGNS VSFLIQEQTVLGFVAQGDQIKPEAKNLIDSLKAQNITPVMLTGDNPQSAQVVAKQLGITEVHAGLLPEDKAKLVQQYQAD GSHVMMIGDGVNDAPSLARADIGVAIGSGTDVAIDSADIVLVKSNPNDVVDFLALARRTTRKMAQNLWWGAGYNVITIPL AAGILAPLGFILNPMFGAVVMSLSTVIVAINAMTLRLKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SH0105 | YP_252020.1 | hypothetical protein | Not tested | SCCmec | Protein | 3e-150 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| copB | YP_003064279.1 | copper transporting ATPase | BAC0079 | Protein | 1e-163 | 56 |
| copB | YP_003064279.1 | copper transporting ATPase | BAC0383 | Protein | 5e-138 | 50 |
| copB | YP_003064279.1 | copper transporting ATPase | BAC0629 | Protein | 2e-121 | 46 |
