Gene Information

Name : JDM1_2265 (JDM1_2265)
Accession : YP_003063849.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2425181 - 2425861 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTCAACCAGTTTTAGCCTTACAAAATATTAATAAACAATTTGGTCACGGTCATACCGCTGTTAACGCTTTGACTGA
TGCCAATTTCGAAGTCAGTGCTGGCCAATTCGTCGCGATTATCGGCCCCTCTGGCTCAGGTAAATCCACCTTTTTGACGA
TTGCTGCCGGTCTACAAACGCCAACAAGTGGTCAAGTTATTCTGAACGGACAACCACTATCGAATCAAACGGAAAAACAG
CGCTTAGCCTACCGTTTCAATGAAATTGGCTTTATCTTGCAGAGTTCCAATCTGATTCCATTCCTGACGGTTCGTGAACA
GTTCAAGCTCGTCGATAAAATGGCCCGGCGCAAATTTGATCAAGCAGGCACCGATGAATTACTAGCAGAGTTAGCCCTTA
CTGAAGTTCGGGATGCCTACCCAAGTGACCTCTCCGGTGGTGAACGCCAACGTGTTGCCATCGCCCGCGCTCTTTACAAT
GATCCAAGCGTCATTCTCGCAGACGAACCGACCGCCAGCCTGGACACGCCCCGCTCCATCGACGTCGTTAAGCGCCTCGC
CAACGAAGCTCATCAGCACCAAAAGGCCATCGTAATGGTGACCCATGACCAACGGCTGATTGATGACTGTGACGTGGTCT
ATCAAATTGAAGATGGTAAGATGAGTCGCCGCGACTCGTAG

Protein sequence : 
MSQPVLALQNINKQFGHGHTAVNALTDANFEVSAGQFVAIIGPSGSGKSTFLTIAAGLQTPTSGQVILNGQPLSNQTEKQ
RLAYRFNEIGFILQSSNLIPFLTVREQFKLVDKMARRKFDQAGTDELLAELALTEVRDAYPSDLSGGERQRVAIARALYN
DPSVILADEPTASLDTPRSIDVVKRLANEAHQHQKAIVMVTHDQRLIDDCDVVYQIEDGKMSRRDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 4e-40 46
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-45 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JDM1_2265 YP_003063849.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-32 42
JDM1_2265 YP_003063849.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-27 42