Gene Information

Name : metC1 (JDM1_0227)
Accession : YP_003061813.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Resistance
Product : cystathionine beta-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 240563 - 241708 bp
Length : 1146 bp
Strand : -
Note : -

DNA sequence :
ATGAAATTTGAAACCCAATTAATTCACGGTGGTATCAGTGAGGACGCCACTACTGGCGCGACTTCGGTACCCATCTACAT
GGCCTCGACCTTCCGCCAAACAAAAATCGGTCAAAATCAATACGAATATTCACGGACGGGAAATCCAACCCGGGCCGCCG
TCGAAGCATTAATTGCCACCCTCGAACATGGCAGCGCTGGCTTCGCATTTGCTTCTGGCTCCGCTGCCATTAATACCGTC
TTCTCACTATTCTCGGTTGGTGATCACATTATTGTGGGAAATGATGTCTACGGTGGCACCTTCCGCTTGATCGACGCCGT
TTTGAAACACTTTGGCATGACTTTTACAGCCGTAGATACGCGTGACTTGGCCGCCGTTGAAGCCGCAATTACCCCCACAA
CTAAGGCGATTTATTTGGAAACACCGACGAACCCGTTATTACACATTACGGATATTGCTGCCATTGCGAAGCTCGCGCAA
GCACACGATTTACTGAGTATCATCGACAACACCTTCGCCTCCCCATACGTCCAGAAGCCCCTGGATTTAGGCGTTGACAT
TGTTTTACACAGTGCTTCCAAGTATCTCGGTGGTCACAGTGATGTTATCGGTGGCTTGGTTGTCACCAAGACGCCAGCAC
TTGGCGAAAAAATCGGCTACTTGCAAAATGCCATCGGTAGTATTTTGGCCCCGCAAGAAAGCTGGCTATTACAACGTGGT
ATGAAGACTCTGGCATTGCGCATGCAAGCCCACCTGAATAATGCCGCTAAAATCTTTACTTACTTAAAGTCTCACCCAGC
AGTTGCTAAGATTTACTATCCAGGCGATCCTGATAATCCCGATTTTTCGATTGCCAAGCAACAGATGAATGGCTTCGGCG
CAATGATCTCGTTTGAATTACAACCAGGAATGAACCCCCAGACCTTCGTTGAACATTTACAAGTCATCACGCTCGCCGAA
AGTCTCGGAGCATTGGAAAGTTTAATTGAAATTCCAGCCTTAATGACTCACGGTGCCATCCCACGCACAATTCGGCTACA
GAATGGCATCAAAGACGAGCTGATTCGCTTATCAGTCGGTGTTGAAGCCAGTGACGATTTGTTAGCAGACCTTGAGCGCG
GGTTCGTTAGCATTCAGGCAGATTAA

Protein sequence :
MKFETQLIHGGISEDATTGATSVPIYMASTFRQTKIGQNQYEYSRTGNPTRAAVEALIATLEHGSAGFAFASGSAAINTV
FSLFSVGDHIIVGNDVYGGTFRLIDAVLKHFGMTFTAVDTRDLAAVEAAITPTTKAIYLETPTNPLLHITDIAAIAKLAQ
AHDLLSIIDNTFASPYVQKPLDLGVDIVLHSASKYLGGHSDVIGGLVVTKTPALGEKIGYLQNAIGSILAPQESWLLQRG
MKTLALRMQAHLNNAAKIFTYLKSHPAVAKIYYPGDPDNPDFSIAKQQMNGFGAMISFELQPGMNPQTFVEHLQVITLAE
SLGALESLIEIPALMTHGAIPRTIRLQNGIKDELIRLSVGVEASDDLLADLERGFVSIQAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 4e-81 49
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 4e-82 49
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 4e-66 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
metC1 YP_003061813.1 cystathionine beta-lyase BAC0207 Protein 9e-64 43