Gene Information

Name : JDM1_2196 (JDM1_2196)
Accession : YP_003063780.1
Strain : Lactobacillus plantarum JDM1
Genome accession: NC_012984
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2346107 - 2346865 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACCACACCAATCATGACCGTCAGCGACCTGCACAAAACGTATGGTAAGGCGGGCAGCAAACAATACGAAGCGTT
AAAAGGCATTAATTTCAATGTGCAACCAGGGGAATTTGTCGGAATCATGGGCGCATCTGGTTCAGGGAAAACCACCTTGC
TCAATATGCTGGCCACACTGGACCAACCAACTAGCGGTGAAGTGACTATTCATCAACAACCGATTACACATCTGAAAGGC
AATCAACTTGCTGATTTCCGGGCCAAAGAGATTGGGTTTATCTTCCAAGATTTCAACTTATTAGAAACTATGACTGCTTA
CGAGAATATCGCCCTACCATTGTCGCTGCAAAATACGCCAGTCAAAAAGATCAAGCCAGCTGTCGAAAAAGTCGCACACC
AATTGGGAATTGAAGAATTCCTATCAAACTATCCTAATGAATTATCTGGTGGTCAAAAGCAACGTGTGGCAGCCGCACGA
GCCTTAATCAATGACCCCGCTATTCTATTTGGTGATGAACCAACTGGTGCCCTTGATTCTAAGTCAGCGCGTGAATTACT
CGACCTGTTCACCAAAATCAACCAAGAACGGGCTGTCTCTATCTTGCTGGTGACCCATGATCCATTTTCAGCTAGCTTCT
GTCAACGAATCTTATTCATCAAAGATGGCCGGATTGGGCAAGAACTTAAACGTGGGGATTTAAGCCGCAGTGATTTTTAT
CAACAAGTCCTCGACAACCTAGGGACATTTGAACAGTAA

Protein sequence : 
MTTTPIMTVSDLHKTYGKAGSKQYEALKGINFNVQPGEFVGIMGASGSGKTTLLNMLATLDQPTSGEVTIHQQPITHLKG
NQLADFRAKEIGFIFQDFNLLETMTAYENIALPLSLQNTPVKKIKPAVEKVAHQLGIEEFLSNYPNELSGGQKQRVAAAR
ALINDPAILFGDEPTGALDSKSARELLDLFTKINQERAVSILLVTHDPFSASFCQRILFIKDGRIGQELKRGDLSRSDFY
QQVLDNLGTFEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-36 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
JDM1_2196 YP_003063780.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 9e-34 43
JDM1_2196 YP_003063780.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-43 42
JDM1_2196 YP_003063780.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-40 41
JDM1_2196 YP_003063780.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 6e-34 41