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Name : tkt (HELPY_0365) Accession : YP_003057158.1 Strain : Helicobacter pylori B38 Genome accession: NC_012973 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : 2.2.1.- Position : 361451 - 363376 bp Length : 1926 bp Strand : - Note : catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during expo DNA sequence : ATGCGATTGAGTAACGCTGACTTGGAACGATTAAAAAGCATGGCGAATGCGCTTCGCTTTTTGTGCGCAGACATGATAGA TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTAGGGCTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTAAACCTTA ACCCCATTAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTGGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGTTTAGAAGATTTAAAGCGTTTCAGGCAATTGCACTCTAAAACCCCAGGACACCC CGAATTGCACCACACCGAAGGCATTGAGATTACCACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGTTTTAGCA TGGCGAGCCAATACGCTCAAACCCTTTTAGATAAAGAAGCGATTTCCCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT TTGCAAGAAGGCATTAGTTATGAGAGCACTTCTTTAGCCGGGCACCTTCGCCTTGATAACCTCATTGTGATTTATGACAG CAACCAAATTAGCATTGAAGGCACTATTGATATTAGTTTTAGCGAACAGGTTAAAATGCGGTTTGTGGCGCAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAGATCCATTAAACCCACG CTTTTAATCGCTCATACAATTATTGGTAAGGGAGCTGTTGGCTTAGAGGGAAGTGAAAAAACGCATGGCTCGCCTTTAAA TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGCTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA AAAATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCCATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGGGGGAGCGCGGATCTAGCCCCCT CTAATAACACGCATTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCGGCGTATGGTTTGTTTTTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTATTT AATGCCCAGCATGCGTTTGAGCGCTTTGATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG AAGACGGAGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCTAATTTCTATGCTTTCAGGCCTAGC GATGCTTTTGAAAATAAGGCTTGCATGCAAGTAGCGTTAAGTTTGAACGCTCCTAGCGCTCTTATTTTATCGCGCCAGAA TTTGCCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACATGATTCTAAAGATCCCATTA TCACGCTCGTTGCGAGCGGGAGCGAGGTTTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGCACGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTCTTTAAGGGCAAAGT CTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTGCTCAAC GCATGA Protein sequence : MRLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPINPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDKEAISHKVYCLCGDGD LQEGISYESTSLAGHLRLDNLIVIYDSNQISIEGTIDISFSEQVKMRFVAQNWEVLECDGHDYQAIHNALEEAKRSIKPT LLIAHTIIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTKE KIHALKDFDFSAIHYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLFLPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS DAFENKACMQVALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHDSKDPIITLVASGSEVSLALESAKILERENIPT QVVSTPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 2e-96 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 1e-87 | 41 |
