Gene Information

Name : ECD_03540 (ECD_03540)
Accession : YP_003056107.1
Strain : Escherichia coli BL21(DE3)
Genome accession: NC_012971
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3723685 - 3724530 bp
Length : 846 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAAACATCACAATCTCCCATCCGGAAGTGGTCACCGGGAATACGGACGTTATCTGCTCCACCAGTATCCGACACGT
TGTGACGGTACGGAATGCAGCACTGCAACAAACCGAAACGCTTATCCGGCAATTGACTGAAATCTCAGTACTGACAAAAA
GCATTGGTGGTAAAAGCGCACGGGACTGGGCGATGAAACAGGATTTTCGCTGCGGATGCTGGCTCATGGAGAAACCTGAA
ACAGCAATGAAAGCCATCACCCGCAACCTTGACCGCGAAATCTGGCGTGACCTGATGCAACGTTCCGGGATGCTGTCATT
AATGGATGCGCAGGCCCGTGATACATGGTACCGGTCACTGGAGTACGATAATTTTCCGGAAATCAGTGAAGCGAACATTC
TGAGCACATTTGAACAACTGCACCAGAATAAGGATGAGGTGTTTGAGCGAGGGGTAATTAATGTTTTCAGGGGACTGAGC
TGGAATTACAAAAACAATTCACCCTGTAAATTTGGCAGTAAAATTATCGTCAACAATCTGGTGAGGTGGGACAGATGGGG
ATTTCATCTGAACAACGGCCCACAGGCCGATCGACTTGCCGACCTGGAAAGAATGCTGCATCTGTTCAGCGGCAAACCGA
TCCCCGACAACCGGGAAAACATCACTATTCATCTGAATGAGCACATCCGGTCTGTTCAGGGTAAAGAGTGCTATGAAGAT
GAAATGTTCAGCATCAGATACTTTAAGAAGGGCTCCGCGCACATCACGTTCAGGAAACCAGAACTGGTTGATCGGCTAAA
TGATATTATAGCCAGACACTATCCGGAAATGTTACCTTCACAATAG

Protein sequence : 
MSNITISHPEVVTGNTDVICSTSIRHVVTVRNAALQQTETLIRQLTEISVLTKSIGGKSARDWAMKQDFRCGCWLMEKPE
TAMKAITRNLDREIWRDLMQRSGMLSLMDAQARDTWYRSLEYDNFPEISEANILSTFEQLHQNKDEVFERGVINVFRGLS
WNYKNNSPCKFGSKIIVNNLVRWDRWGFHLNNGPQADRLADLERMLHLFSGKPIPDNRENITIHLNEHIRSVQGKECYED
EMFSIRYFKKGSAHITFRKPELVDRLNDIIARHYPEMLPSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec79 AAW51762.1 Aec79 Not tested AGI-3 Protein 2e-128 97
ORF_49 AAZ04463.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-121 91
APECO1_3484 YP_854327.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-121 91
z1226 CAD33792.1 Z1226 protein Not tested PAI I 536 Protein 6e-121 89
Z1226 NP_286760.1 hypothetical protein Not tested TAI Protein 7e-121 88
Z1664 NP_287166.1 hypothetical protein Not tested TAI Protein 7e-121 88
unnamed AAL57572.1 unknown Not tested LEE Protein 4e-118 88
unnamed CAI43906.1 hypothetical protein Not tested LEE Protein 6e-117 87
unnamed CAE85207.1 hypothetical protein Not tested PAI V 536 Protein 2e-117 85
ECO111_3781 YP_003236116.1 hypothetical protein Not tested LEE Protein 4e-116 84
unnamed AAK00485.1 unknown Not tested SHI-1 Protein 2e-114 83
ECO103_3595 YP_003223452.1 hypothetical protein Not tested LEE Protein 3e-114 83
S3207 NP_838489.1 hypothetical protein Not tested SHI-1 Protein 2e-114 83
SF3002 NP_708776.1 hypothetical protein Not tested SHI-1 Protein 2e-114 83
unnamed CAD66210.1 hypothetical protein Not tested PAI III 536 Protein 8e-107 82

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECD_03540 YP_003056107.1 hypothetical protein VFG1533 Protein 3e-121 89
ECD_03540 YP_003056107.1 hypothetical protein VFG0666 Protein 1e-114 83
ECD_03540 YP_003056107.1 hypothetical protein VFG1685 Protein 5e-107 82