Gene Information

Name : ygiX (ECD_02897)
Accession : YP_003055472.1
Strain : Escherichia coli BL21(DE3)
Genome accession: NC_012971
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator in two-component regulatory system with QseC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3037265 - 3037924 bp
Length : 660 bp
Strand : +
Note : similar to b3025

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0487 Protein 4e-40 44
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0638 Protein 6e-31 44
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0083 Protein 1e-36 43
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0347 Protein 9e-34 42
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC NC_002516.2.879194.p Protein 8e-31 41
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0308 Protein 2e-36 41
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0197 Protein 4e-36 41
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC BAC0111 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC VFG0473 Protein 2e-40 47
ygiX YP_003055472.1 DNA-binding response regulator in two-component regulatory system with QseC VFG1390 Protein 2e-32 42