Gene Information

Name : ECD_02818 (ECD_02818)
Accession : YP_003055394.1
Strain : Escherichia coli BL21(DE3)
Genome accession: NC_012971
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export protein KpsC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2950350 - 2952377 bp
Length : 2028 bp
Strand : +
Note : -

DNA sequence :
ATGATTGGCATTTTCTCGTCCGGTATCTGGCGTATTCCGCATCTGGAGAAATTTCTGGCGCAACCGTGCCAGAAACTTTC
TCTGCTGCGCCCTGTTCCGCAAGAAGTTGATGCTATCGCCGTGTGGGGACATCGTCCCAGCGCGGCGAAACCAGTCGCCA
TCGCCAAAGCAGCGGGAAAACCCGTCATTCGTCTGGAAGATGGATTTGTGCGTTCGCTGGATCTTGGCGTCAATGGCGAG
CCGCCGCTTTCTCTGGTGGTGGATGATTGTGGCATTTACTACGATGCCAGCAAGCCTTCAGCACTGGAGAAACTGGTAAA
GGATAAAGCCGGAAATACAGCTCTGATAAGCCAGGCCAGAGAAGCGATGCACACCATCGTGACCGGGGATTTGTCGAAAT
ATAACCTGGCACCTGCGTTTGTGGCTGATGAGTCAGAACGTTCAGACATCGTTCTGGTTGTCGATCAGACATTTAATGAT
ATGTCAGTGACGTATGGCAATGCTGGCCCGCATGAGTTTGCTGCCATGCTGGAAGCCGCGATGGCGGAAAATCCTCAAGC
CGAAATTTGGGTGAAGGTGCATCCGGATGTCCTGGAAGGAAAGAAAACAGGTTATTTCGCTGATCTGTGCGCCACGCAAC
GAGTACGTTTGATTGCCGAGAATGTCAGCCCGCAGTCGCTGTTGCGACACGTTTCCCGGGTTTACGTCGTGACCTCCCAA
TATGGCTTTGAAGCCTTGCTGGCAGGAAAACCAGTAACATGCTTCGGCCAGCCCTGGTATGCAGGTTGGGGCTTAACCGA
CGATCGTCATCCACAGTCCGCTTTGTTATCTGCCCGACGCGGTTCTGCCACGCTGGAGGAACTTTTTGCCGCTGCATACC
TGCGTTACTGTCGCTATATCGATCTGCAAACGGGAGAAGTAAGCGATCTATTTACCGTGCTGCAATGGCTGCAATTACAA
CGTCGACATCTGCAACAGCGTAATGGTTATTTATGGGCGCCAGGCTTAACGCTGTGGAAGTCAGCGATCCTGAAACCTTT
CTTGCAAACGGCAACAAACCGGCTGAGTTTTTCACGTCGTTGTACTGCGGCGAGCGCCTGCGTGGTATGGGGTGTAAAGG
GAGAACAGCAATGGCGAGCCGAAGCGCAACGAAAATCACTGCCGTTATGGCGAATGGAAGATGGTTTTCTGCGTTCATCC
GGACTTGGCTCTGACCTGCTGCCGCCGCTATCGTTGGTGCTGGATAAACGCGGGATCTACTATGACGCCACGCGCCCCAG
CGACCTGGAAGTGCTGATTAATCACAGCCAGTTAACGCTGGCGCAGCAGATGCGAGCTGAAAAATTACGCCAGCGGCTAG
TTGAAAGTAAACTGAGCAAGTACAACTTGGGGGCCGATTTCTCTCTGCCTGCCGAAGCCAAAGATAAAAAAATCATCCTG
GTGCCGGGTCAGGTAGAAGACGATGCCTCTATTAAAACTGGCACTGTGTCGATTAAGAGCAACCTTGAGTTATTACGCAC
AGTGCGCGAGCGTAATCCGCACGCCTACATTATTTATAAACCGCACCCGGATGTATTAGTGGGGAATCGTAAGGGCAATA
TTCCGGCTAAATTGATCGCTGAACTTGCCGACTATCAGGCACTGGACGCAGATATTATTCAATGCATTCAGCGCGCAGAT
GAAGTGCACACCATGACATCATTGTCCGGGTTTGAAGCGTTATTACATGGCAAGCAAGTTCATTGTTACGGCCTGCCCTT
CTATGCCGGTTGGGGTTTAACCGCTGATGAACATCACTGCCCGCGCCGCGAGCGCAGATTAACGATAGCAGACTTGATCT
ATCAGGCGTTGATTGTTTATCCAACCTATATCCACCCAATACGGCTACAACCTATTACTGTTGAAGAGGCGGCGGAATAT
TTGATCCAGACGCCGCGCAAGCCGATGTTTATTACCCGAAAAAAAGCGGGGCGAGTAATACGCTATTACCGCAAATTAAT
TATGTTCTGCAAGGTCAGATTTGGCTAA

Protein sequence :
MIGIFSSGIWRIPHLEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGE
PPLSLVVDDCGIYYDASKPSALEKLVKDKAGNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERSDIVLVVDQTFND
MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLCATQRVRLIAENVSPQSLLRHVSRVYVVTSQ
YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARRGSATLEELFAAAYLRYCRYIDLQTGEVSDLFTVLQWLQLQ
RRHLQQRNGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAASACVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSS
GLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLINHSQLTLAQQMRAEKLRQRLVESKLSKYNLGADFSLPAEAKDKKIIL
VPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPAKLIAELADYQALDADIIQCIQRAD
EVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTADEHHCPRRERRLTIADLIYQALIVYPTYIHPIRLQPITVEEAAEY
LIQTPRKPMFITRKKAGRVIRYYRKLIMFCKVRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 0.0 97
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 0.0 97
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 2e-126 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECD_02818 YP_003055394.1 capsule polysaccharide export protein KpsC VFG0259 Protein 9e-127 50
ECD_02818 YP_003055394.1 capsule polysaccharide export protein KpsC VFG0692 Protein 1e-115 48
ECD_02818 YP_003055394.1 capsule polysaccharide export protein KpsC VFG0704 Protein 8e-103 47