Gene Information

Name : ycfV (ECD_01113)
Accession : YP_003053779.1
Strain : Escherichia coli BL21(DE3)
Genome accession: NC_012971
Putative virulence/resistance : Resistance
Product : outer membrane-specific lipoprotein transporter subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1179212 - 1179913 bp
Length : 702 bp
Strand : +
Note : similar to b1117

DNA sequence : 
ATGAATAAGATCCTGTTGCAATGCGACAACCTGTGCAAACGCTATCAGGAAGGCAGTGTGCAAACCGATGTACTGCACAA
TGTCAGTTTCAGCGTGGGCGAAGGTGAAATGATGGCGATCGTCGGTAGCTCTGGTTCCGGTAAAAGCACCTTGCTGCACT
TGTTGGGCGGGCTGGATACGCCAACCTCCGGCGATGTGATCTTTAACGGTCAACCGATGAGCAAACTGTCTTCGGCGGCG
AAAGCAGAGCTGCGCAACCAGAAGCTGGGCTTTATTTATCAGTTTCACCATCTGCTGCCGGATTTTACCGCCCTGGAAAA
CGTGGCTATGCCGCTGCTGATTGGCAAGAAAAAGCCCGCTGAAATCAACAGCCGTGCGCTGGAGATGTTAAAAGCGGTGG
GGCTGGAGCATCGTGCGAATCACCGTCCATCTGAACTTTCTGGCGGCGAACGCCAGCGTGTGGCGATTGCCCGTGCGCTG
GTGAATAACCCGCGCCTGGTACTGGCGGATGAACCTACCGGTAACCTTGACGCGCGTAACGCCGACAGCATCTTCCAGTT
GCTTGGGGAATTGAATCGCTTGCAGGGCACCGCTTTCCTGGTGGTCACTCACGACCTGCAACTGGCGAAACGTATGAGCC
GCCAACTGGAAATGCGTGATGGTCGTCTGACGGCGGAACTGAGCCTGATGGGGGCGGAGTAA

Protein sequence : 
MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA
KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSLMGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycfV YP_003053779.1 outer membrane-specific lipoprotein transporter subunit NC_008702.1.4606598. Protein 2e-37 49
ycfV YP_003053779.1 outer membrane-specific lipoprotein transporter subunit NC_012469.1.7686878. Protein 4e-41 45
ycfV YP_003053779.1 outer membrane-specific lipoprotein transporter subunit CP001581.1.gene798.p Protein 6e-37 41