Gene Information

Name : Msip34_0882 (Msip34_0882)
Accession : YP_003050657.1
Strain : Methylovorus glucosetrophus SIP3-4
Genome accession: NC_012969
Putative virulence/resistance : Virulence
Product : putative Fis family two component sigma54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 931096 - 932490 bp
Length : 1395 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: mfa:Mfla_1055 two component, sigma54 specific, fis fa

DNA sequence : 
ATGAGTGTTTTGGCTTTATCGCCCGTCACCGGCCGCAAGATTCTGGCTGTAGACGACGATCCCGACATTCTTAAACTGCT
GGAAATGCGGCTGGTGGCTGCTGGCTACCAGGTTGTCACCGCGGCCAATGGCGAAGAAGCGCTGGCGCATATCGGGGTGA
GTCGCCCCGCACTGGTGATCAGCGATCTGCGCATGCCGCGCATGGACGGCCTGGCGCTGTTTGACGCCATCCATCAGGCG
GACCCCGCCCTGCCCGTCATCCTGCTCACCGCGCACGGCTCAATTCCGGAAGCGGTGGATGCCACCCGGCGTGGCGTGTT
TGGCTTTTTGACAAAACCATTTGACAGCAAATCCCTGTTGCAGCAGGTGGAAGCGGCCTTGCGGCTAACGGCTGGCGCGC
ATGTCACGGCAGACAGCACGGAAGATCAAAGCTGGCGCGAAGCCATTATTACGCGCAGTCCGCACATGGAAAACCTGCTG
AGCCAGGCCAAATTGATGGCCATGTCAGACGCCAGTGTGTTTATTCAAGGCGACAGTGGTACCGGCAAGGAACTGCTGGC
GCGTGCCATACACAAAGCCAGTCCGCGCAATCGCCGCCCGTTTGTGGCGATCAACTGTGGCGCGATCCCCGAAGCCCTGC
TTGAATCCGAGCTGTTTGGTCATACCAAAGGCGCCTTTACCGGCGCCGTCCGGGATAACAAAGGCCTGTTCCAGAGCGCG
GAAGGCGGCACGATTTTCCTCGATGAAATCGGCGACATGCCCATGCCCTTGCAGGTCAAGCTGCTACGGGCGTTACAAGA
GCGCGTGATACGGCCTGTGGGCTCCAACACCTCGATTGCGGTAGATGTACGGATTATTTCGGCCACGCATAAAAACCTGG
CCGAAGAAATGAAAGCCGGGCGTTTCCGTGAGGATTTGTATTACCGCATCAACGTGGTATCGCTGGATATCCCTTCCCTG
GCAGGCAGGCGCGAGGATATCCCCCTCTTGGCCAATAACTTCCTCCATGCCTTGAGCACCAAATACGGCAAAAACCTCAA
TGGCTTTTCACCCGACGCCATGGAGTTGCTGATTGCAGCGCCGTGGCCGGGCAATGTCCGGCAATTGCAAAACATCGTGG
AACAGACGGTGGTGTTATCGACCACACCGCTGGTATCCACCTCCCTGGTACAAAAAGCCCTGCAGGACGATATCGGTGGC
ATTGTGCCGTTTGAGATTGCGCGCAAGAACTTTGAGCGTGACTACCTTATCAAGCTGCTCAAGGCCACCAATGGCGGCGT
CACGCAAGCTGCCAGACTGGCTCAACGTAATCGCACCGAGTTCTACAAGCTGCTGCAACGGCATCAATTGACCCCGGCGT
TGTTCAAAGACGACACCAGCGGCCAAGCTGCCTAG

Protein sequence : 
MSVLALSPVTGRKILAVDDDPDILKLLEMRLVAAGYQVVTAANGEEALAHIGVSRPALVISDLRMPRMDGLALFDAIHQA
DPALPVILLTAHGSIPEAVDATRRGVFGFLTKPFDSKSLLQQVEAALRLTAGAHVTADSTEDQSWREAIITRSPHMENLL
SQAKLMAMSDASVFIQGDSGTGKELLARAIHKASPRNRRPFVAINCGAIPEALLESELFGHTKGAFTGAVRDNKGLFQSA
EGGTIFLDEIGDMPMPLQVKLLRALQERVIRPVGSNTSIAVDVRIISATHKNLAEEMKAGRFREDLYYRINVVSLDIPSL
AGRREDIPLLANNFLHALSTKYGKNLNGFSPDAMELLIAAPWPGNVRQLQNIVEQTVVLSTTPLVSTSLVQKALQDDIGG
IVPFEIARKNFERDYLIKLLKATNGGVTQAARLAQRNRTEFYKLLQRHQLTPALFKDDTSGQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-61 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-61 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msip34_0882 YP_003050657.1 putative Fis family two component sigma54 specific transcriptional regulator BAC0467 Protein 1e-83 50
Msip34_0882 YP_003050657.1 putative Fis family two component sigma54 specific transcriptional regulator BAC0089 Protein 8e-86 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msip34_0882 YP_003050657.1 putative Fis family two component sigma54 specific transcriptional regulator VFG1214 Protein 8e-77 48
Msip34_0882 YP_003050657.1 putative Fis family two component sigma54 specific transcriptional regulator VFG1249 Protein 1e-67 43
Msip34_0882 YP_003050657.1 putative Fis family two component sigma54 specific transcriptional regulator VFG0116 Protein 2e-60 41