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Name : Msip34_0587 (Msip34_0587) Accession : YP_003050362.1 Strain : Methylovorus glucosetrophus SIP3-4 Genome accession: NC_012969 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 612367 - 614088 bp Length : 1722 bp Strand : - Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: mfa:Mfla_2141 type II secretion system protein E DNA sequence : ATGGCAGCCACCACCCTTCCCAGTAAGTTAGGCGGGCTTGCACGCATGCTGGTGCAAGAGCAACTGCTATCGGAAGAAGA CGCGGCCAGTGTACAGGCCAGTGCAACTGCACAACGCATCCCCTTTGTCAGCCAGCTGGTACAAAGCAAGAAACTGCCGG CACTGAAAATTGCCGAGACGGCAGCCAATGCCTTCGGCTTCCCCTTGTTTGATCTTGATGCTTTAAATCCCGATTACATT CCGGCCAAAACGATAGACACCAAGCTCATGGCGAGCAGCCGTGTCATGGCATTGCAAAGCCGCGGCAATTCGCTGTTTGT CGCCCTGTCCGACCCCACCAATCTGCATGCCCTGGATGATGTGCAGTTTCAGGTGGGCATGGCGCTTTCCCCTGTGGTGG TCGAAGAAGACAAACTGAGCAAGTGGATTGCCAGACTGGTGGAAGCGAGCGATACCAGCATGCAATCGCTCAGCATGAGC GATGAATTTAGCCTGGACATGGAATCCGGCAATGAGCCGGTGGAGCAAGAAGTCAGCAGTGCGGAAATTGACGATGCTCC GGTGGTGAAATACATCCAGAAGATACTGCTGGATGCGATCAACATGGGCGCCTCTGACCTGCATTTCGAACCGTATGAAA AGTATTACCGCATTCGCTATCGGGTAGATGGTGTGTTGCAGGAAATCGCCCAGCCACCGCTGGCCATCAAGGAAAAAATG GCCTCCCGCATCAAGGTGATCTCCAATCTGGATATCTCGGAAAAGCGTGTTCCGCAGGATGGCCGCATGAAACTGGTGCT GTCCAAAACCCGGACCATCGACTTCCGCGTCAGCACCCTGCCCATGATCAATGGCGAAAAAATCGTCATGCGGATTCTGG ACCCGAGCAGCGCCACGCTGGGCATTGAGGCATTGGGGTATGAGCCAGACCAGAAAGAGGCACTGCTCAGTGCCGTCAGC CGCCCATATGGATTGGTGCTGGTCACCGGGCCAACTGGCTCAGGCAAAACCGTGTCCCTCTATACCTGCCTCAATATTCT CAATAGCCCAGGCGTCAATATTTCCACGGCGGAAGACCCGGCGGAAATACCCTTGCCTGGCATCAACCAGGTGAATGTGA ATGACAAGCAGGGCCTGACCTTTGCCGCCGCCTTGAAAGCATTTTTGCGGCAGGATCCCGATATCATCATGATCGGGGAA ATTCGCGATCTGGAAACGGCCGACATGGCGATCAAGGCCGCCTCGACCGGGCACATGGTGCTGTCCACCCTGCATACCAA CGATGCGCCATCGACCCTGACCCGCCTGATGAATATGGGCGTGGCGCCTTTCAATATTGCCTCGGCTGTTTCGCTGATTA CAGCCCAGCGCCTGGCACGACGCTTGTGCCCGCATTGCAGAGAGCCACTCGACCTGCCAAAAGAAGCGCTGCTGAGTGTG GGATTCACCGAAGCCGATCTGGATGGAAGCTGGCAACTGTATGGGCCGCGCGAGGGTGGCTGCGAGATGTGCAATGGCGG CTACAAAGGTCGGGTGGGTATTTACCAGGTCATGCCCGTTTCGGATGAAATGAGCCGTATCATCATGAAAAACGGCACCG CGCATGATATTGCGGACCAGGCCAAGCGCGAAGGCGTACGTGACCTTCGCCAGTCAGGCCTCATGAAAGTCAAACAGGGT CTCACTTCCATCGCAGAGGTTGAGGCAGTGACCAATGAATAA Protein sequence : MAATTLPSKLGGLARMLVQEQLLSEEDAASVQASATAQRIPFVSQLVQSKKLPALKIAETAANAFGFPLFDLDALNPDYI PAKTIDTKLMASSRVMALQSRGNSLFVALSDPTNLHALDDVQFQVGMALSPVVVEEDKLSKWIARLVEASDTSMQSLSMS DEFSLDMESGNEPVEQEVSSAEIDDAPVVKYIQKILLDAINMGASDLHFEPYEKYYRIRYRVDGVLQEIAQPPLAIKEKM ASRIKVISNLDISEKRVPQDGRMKLVLSKTRTIDFRVSTLPMINGEKIVMRILDPSSATLGIEALGYEPDQKEALLSAVS RPYGLVLVTGPTGSGKTVSLYTCLNILNSPGVNISTAEDPAEIPLPGINQVNVNDKQGLTFAAALKAFLRQDPDIIMIGE IRDLETADMAIKAASTGHMVLSTLHTNDAPSTLTRLMNMGVAPFNIASAVSLITAQRLARRLCPHCREPLDLPKEALLSV GFTEADLDGSWQLYGPREGGCEMCNGGYKGRVGIYQVMPVSDEMSRIIMKNGTAHDIADQAKREGVRDLRQSGLMKVKQG LTSIAEVEAVTNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-75 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-75 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 3e-158 | 56 |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 6e-138 | 53 |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 2e-145 | 52 |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 6e-79 | 44 |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 8e-77 | 42 |
| Msip34_0587 | YP_003050362.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 1e-78 | 41 |
