Gene Information

Name : Msip34_2474 (Msip34_2474)
Accession : YP_003052238.1
Strain : Methylovorus glucosetrophus SIP3-4
Genome accession: NC_012969
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2605182 - 2605853 bp
Length : 672 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tmz:Tmz1t_1421 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGGGTTTTGCTAGTGGAAGACGACGCCGTACTCGGTGATGCCATTCATCGCTCGCTGATCAAATCCGGTTATGCGGT
GGACTGGACGCAGGACGGGCAGCAGGCGGATGTGGCGCTGCATGAGCAAGTCTACGATGCGGTGGTGCTGGATCTGGGTC
TGCCGCGCATGGATGGCCTCGAGGTGTTGCGGCGCCTGCGTCAGCGCAAACAGCTGGTGCCGGTAGTGATACTCTCGGCG
CGCGAGGGGCTGGATGACCGGGTGCACGGACTGGACCTGGGCGCGGATGATTACCTGACCAAGCCTTTCAAGCTGCCGGA
GCTGGAAGCGCGGTTGCGGGCGCAGATACGTCGCAGTCATCAGGTGGTGACGTCGTATATAGATTTTGGCCCCATGCGTT
TCGATAGCACCGACCGCACAGTCACGGTCAATGGTGCGCTGGTGGAGTTTTCGCAGCGGGAGTTGAGCGTGCTGGAAGCG
CTGATCTTGCGCAGCGGGCGCGTGGTGAGCAAGGAGTCGCTGGTGGAAAATCTGTGCAACTGGGATGTCGACGTCGGCAA
CAATGCCATTGAGGTGTATGTTCACCGCCTGCGTAAAAAGCTGGAGCCCTACGGCATCCTGATCCGCACGGTTCGTGGTC
TGGGCTATCTTCTGGAAAAGCAGTCGGCATGA

Protein sequence : 
MRVLLVEDDAVLGDAIHRSLIKSGYAVDWTQDGQQADVALHEQVYDAVVLDLGLPRMDGLEVLRRLRQRKQLVPVVILSA
REGLDDRVHGLDLGADDYLTKPFKLPELEARLRAQIRRSHQVVTSYIDFGPMRFDSTDRTVTVNGALVEFSQRELSVLEA
LILRSGRVVSKESLVENLCNWDVDVGNNAIEVYVHRLRKKLEPYGILIRTVRGLGYLLEKQSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-24 42
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator CP001138.1.gene1939. Protein 5e-26 42
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-29 42
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-27 41
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator CP001918.1.gene2526. Protein 2e-25 41
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 1e-24 41
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator BAC0530 Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator VFG0475 Protein 4e-26 42
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator VFG0473 Protein 7e-29 41
Msip34_2474 YP_003052238.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-23 41