Gene Information

Name : Msip34_1812 (Msip34_1812)
Accession : YP_003051582.1
Strain : Methylovorus glucosetrophus SIP3-4
Genome accession: NC_012969
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1004
EC number : 1.1.1.22
Position : 1920223 - 1921389 bp
Length : 1167 bp
Strand : +
Note : KEGG: sbc:SbBS512_E1203 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase

DNA sequence :
ATGAAGATAGCAATTGCCGGTACCGGCTACGTAGGACTTTCCATGGCGGTGTTGCTGGCCCAAAAAAACGAAGTGGTCGC
GCTCGACATCGTGCCAGAGAAGGTGGAGATGCTGAACCGCAAGCAATCGCCGATTGCCGATGCCGAGATTGAAGAGTATC
TCGCCACCAAGACCCTGAACTTCAAGGCCACCATGGACAAGCAGGCGGCCTATGAAGGCGCCGACTATGTCATCATCGCC
ACGCCGACCGATTACGATCCCGAGACCAACTACTTCAATACCGGCTCGGTGGAAGCCGTGATTCGCGACGTCAAGACTTA
CGCACCGAATGCCGTGATGATCATCAAGTCCACCATTCCGGTCGGCTTTACTGTTGGTGCCCGTGACAAATACCAGACCA
ATAACCTGATCTTCTCGCCGGAATTCCTGCGTGAAGGCAAAGCGCTTTACGACAACCTCTATCCTTCCCGTATTGTGGTG
GGCGAGAAGTCTGCCCGTGCCGAAACCTTTGCTCGCCTGCTGCAAGAAGGCGCGCTGAAAGAGAATATCCCGCTGCTGTT
TACCGATAGCTCCGAAGCCGAAGCCATCAAGCTGTTTGCCAACACCTATCTCGCCATGCGCGTGGCCTATTTCAACGAGC
TGGACAGCTATGCCCTGACCCATGGCCTGGATACCAAACAGATTATCGAAGGCGTGGGCCTGGATCCGCGTATTGGCAGC
CACTACAACAATCCTTCGTTTGGCTATGGTGGCTACTGCCTGCCCAAGGACACCAAGCAATTGCTGGCGAACTTCAACAA
TGTGCCGCAAACGCTGATCAACGCCATTGTGCAGTCCAACACCACCCGCAAGGACTTCGTGGCGGACAGCATCATCAAGC
GCAAGCCAAATGTCGTTGGTATCTATCGCCTCATCATGAAGAGCGGTTCAGATAACTTCCGCGCCTCCAGCATCCAGGGC
ATCATGAAGCGGATCAAGGCCAAGGGCATTGAGGTGATTGTGTATGAACCTGTGCTCACGGAGCCCGAGTTCTTCCGCTC
CAAGGTGGTGAATGATCTGGAAGCCTTCAAGCAAAAGGCCGATGTGATCGTGTCCAACCGCATGGCCAAGGAACTGGCGG
ATGTGGCGGACAAGGTGTTTACGCGCGATTTGTTTGGTAGCGATTGA

Protein sequence :
MKIAIAGTGYVGLSMAVLLAQKNEVVALDIVPEKVEMLNRKQSPIADAEIEEYLATKTLNFKATMDKQAAYEGADYVIIA
TPTDYDPETNYFNTGSVEAVIRDVKTYAPNAVMIIKSTIPVGFTVGARDKYQTNNLIFSPEFLREGKALYDNLYPSRIVV
GEKSARAETFARLLQEGALKENIPLLFTDSSEAEAIKLFANTYLAMRVAYFNELDSYALTHGLDTKQIIEGVGLDPRIGS
HYNNPSFGYGGYCLPKDTKQLLANFNNVPQTLINAIVQSNTTRKDFVADSIIKRKPNVVGIYRLIMKSGSDNFRASSIQG
IMKRIKAKGIEVIVYEPVLTEPEFFRSKVVNDLEAFKQKADVIVSNRMAKELADVADKVFTRDLFGSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 9e-91 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msip34_1812 YP_003051582.1 nucleotide sugar dehydrogenase VFG0963 Protein 7e-103 58