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Name : Msip34_1724 (Msip34_1724) Accession : YP_003051496.1 Strain : Methylovorus glucosetrophus SIP3-4 Genome accession: NC_012969 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1825502 - 1827436 bp Length : 1935 bp Strand : - Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: mfa:Mfla_1278 polys DNA sequence : ATGCCTGGTTTTAAAAATAAATTGCGCGACCATTGGTCGCAGTATCGTCGAATGGCGAACCCACGAACATCTGCTGCCGT CCTGCATGATGTGGCAGTGGCAATTGCTGCATGGTATGTTGCCTTTGCCTTGCGGTTCAATTTCCAAATCCCTGCCTCGT TTCAGGCATCCATGCTACAGGCGATGTTGTGGGTGGTACCTCTGCAGTTCGTCTTCTTTGTGAATTTTGGCCTGTATCGC GGCGTCTGGCGCTTTGCCAGCCTGCCTGATCTCAAACGTATTCTATTCGCTGTCGCGACGGCGGCTGCGACGGTGGTGGC CGTCATTTTCATGACCAAGCCACATGGCGTGATTCCTCGTTCAGTGCTGATCCTCGACCCTATGTTGCTGGTATTGGGCA TGGGAGGGAGCCGTTTTCTCTATCGCTACTGGAAAGAGCATCGCCTGTATGGGGCTTTTCATTCTCAGGGGCAGCCCGTT CTGCTGCTGGGGGCGGGTACGTCGGCCATCAATCTGCTCAAGGATCTGACGCGCAGCCAGGAGTGGCGCGTGGTCGGCAT GCTGGATGACGATGAGGCCATGCATGGGCGCCAGCTGCTGGGCGTCAAGGTGCTGGGGAATATTGATGACATAGGCTATT TTTCACGTCGCTACCAGGTTGAGCATGTGATTGTGGCCATGCCTTCCGCCTCGCATCAGCAGAGAAGGGCCGCCGTGGAA AAAGCCAATGCACATGCGTTGACCATCCTGACGGTGCCTTCGGTGGAAGACTTGATGAATGGCAAGGTCAGCATTTCGCA AATACGACGGGTTGAAGTGGAAGATCTGCTAGGGCGGGAGCCTGTGCAACTCGACACCGAAGGCATGCACGCTCTGCTGC AGGCTCAGGTGGTCATGGTGAGCGGTGCTGGCGGCTCGATAGGTTCGGAGCTCTGCCGTCAGATATTGGCATTCAAGCCA GCCAAGCTGATCTGCCTTGATATCTCGGAGTTTGCTTTATATAAGCTGGAGCAGGAGTTCTCAGCGATGAGCAACCGGCC TGCCGATATTGAATATGTGGTTGGCGATGTGAAGAACGCTGAACGTCTTCGTCATCTATTACAGCAGACCAAGCCGGCTG TCATCTTTCATGCAGCCGCCTACAAGCATGTGCCCATGATGGAAACCGGCAATGTGTCGGAAGCCCTGCATAACAATGTG CTCGGGACTTATACCCTTGCCAGTCTTGCGAAGGAGGCAGGTGTTGCCAAATTCGTGCTGATCTCCACCGATAAAGCCGT GAATCCGACTAACGTGATGGGGGCCAGCAAACGGCTGGCGGAAATGGTGTGCCAGGGTTTGCAGGAAAATCATGGCACCC GTTTTGTTATTGTGCGCTTTGGTAATGTATTGGGCAGCAGCGGCAGTGTTATTCCCAAATTCCGGGAACAGATTGCCAAG GGTGGCCCTGTCACCGTGACTCATCCGGATATCACGCGTTACTTCATGTCTATTCCCGAGGCTACCCAGCTCGTCATGCA AGCGGGCTTGATGGGTAAGGGCAGCGAGATTTTTGTGCTGGATATGGGTGAGTCGGTGAAGATTGCTGATCTGGCGCGCG ATATGATCAAACTATCCGGCCTGCAGGACGATGAAATCGAAATCGTTTTCACCGGCCTGCGTCCTGGTGAAAAATTATAT GAAGAACTGCTCGCCGATGATGAACATACCTTGCCGACGCCTCACGAAAAACTGCGCATTGCCATTGCCCGCTCCGCTGA CTTAACCTGGGTACACGCCTTGCTTAAATGGATAGCCACTACCTTGAATGCGGATGAGGCGACGATCAAGCAGGAGCTGA AGCTGTGGGTGCAGGAATATCAGCATCAAGACACCACTAAGGTTGCCACTGAAACCAAACGCACCCTCGGACCGCAGTCG TCTACCCTTCATTAA Protein sequence : MPGFKNKLRDHWSQYRRMANPRTSAAVLHDVAVAIAAWYVAFALRFNFQIPASFQASMLQAMLWVVPLQFVFFVNFGLYR GVWRFASLPDLKRILFAVATAAATVVAVIFMTKPHGVIPRSVLILDPMLLVLGMGGSRFLYRYWKEHRLYGAFHSQGQPV LLLGAGTSAINLLKDLTRSQEWRVVGMLDDDEAMHGRQLLGVKVLGNIDDIGYFSRRYQVEHVIVAMPSASHQQRRAAVE KANAHALTILTVPSVEDLMNGKVSISQIRRVEVEDLLGREPVQLDTEGMHALLQAQVVMVSGAGGSIGSELCRQILAFKP AKLICLDISEFALYKLEQEFSAMSNRPADIEYVVGDVKNAERLRHLLQQTKPAVIFHAAAYKHVPMMETGNVSEALHNNV LGTYTLASLAKEAGVAKFVLISTDKAVNPTNVMGASKRLAEMVCQGLQENHGTRFVIVRFGNVLGSSGSVIPKFREQIAK GGPVTVTHPDITRYFMSIPEATQLVMQAGLMGKGSEIFVLDMGESVKIADLARDMIKLSGLQDDEIEIVFTGLRPGEKLY EELLADDEHTLPTPHEKLRIAIARSADLTWVHALLKWIATTLNADEATIKQELKLWVQEYQHQDTTKVATETKRTLGPQS STLH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-91 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 8e-87 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Msip34_1724 | YP_003051496.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-87 | 47 |
| Msip34_1724 | YP_003051496.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-93 | 46 |
