Gene Information

Name : ybdM (ECB_00569)
Accession : YP_003043790.1
Strain : Escherichia coli REL606
Genome accession: NC_012967
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 617444 - 618073 bp
Length : 630 bp
Strand : -
Note : similar to b0601

DNA sequence :
ATGGGGGATACTATGCAACAACGATTAACGCAGGATTTAACGCAATTTCTCGCCAGCTTGCCGGAAGACGATCGCATCAA
AGCGATTAATGAAATCCGCATGGCGATCCATCAGGTAAGTCCTTTTCGGGAAGAACCGGTAGATTGTGTTTTGTGGGTCA
AAAATGATCAGCTTGTGCCGAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGAAAAAATCCATT
GAAATAGATGGTTTTACCCAACCCATTGTGGTCACGCATACGGATAAAAATGCCCTGGAAATCGTGGATGGTTTTCACCG
CCATGAAATTGGTAAAGGCTCATCATCGTTAAAATTACGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGC
GTAATCAACGCATCGCCGCGACTATTCGTCATAATCGCGCTCGTGGACGCCATCAAATCACCGCCATGTCGGAAATCGTC
CGTGAACTTAGCCAGTTGGGATGGGACGATAATAAAATTGGCAAAGAGCTGGGAATGGACAGCGACGAAGTGCTGCGCCT
GAAGCAAATTAACGGCCTGCAAGAGTTGTTTGCCGACCGTCAATATTCCCGCGCCTGGACGGTTAAATAA

Protein sequence :
MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNDQLVPNDYNPNNVAPPEKKLLKKSI
EIDGFTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIV
RELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 1e-57 58
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 1e-57 58
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 7e-58 58
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 7e-58 58
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 1e-56 57
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 1e-54 57
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-44 55
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 4e-44 55
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 5e-44 55
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 6e-55 54
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 4e-31 53
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 5e-31 53
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 2e-30 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybdM YP_003043790.1 hypothetical protein VFG1505 Protein 7e-57 57