Gene Information

Name : yghF (ECB_02839)
Accession : YP_003046025.1
Strain : Escherichia coli REL606
Genome accession: NC_012967
Putative virulence/resistance : Virulence
Product : putative type II secretion protein GspC
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3031
EC number : -
Position : 3039024 - 3039854 bp
Length : 831 bp
Strand : -
Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm

DNA sequence : 
ATGTTCTGGCTGATGCTGCTTATTATTTCTGCAAAAGTGGCGCATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATA
TACGGCGGTTTCCCCATCGGCGAATAAACCGCCCCGTGCAGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCA
GCCAGCAAAACTGGTTTGGCAAATATCAGCCCGTCGCCGCACCGGTAAAACAACCTGAACCTGTGCCTGTGGCAGAAACA
CGTCTTAATGTGGTGCTGCGCGGGATCGCCTTTGGTGCCAGACCTGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGT
CTATTTGCAGGGGGAACGGCTTGGTTCTCACAACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATC
AGGGAAAAATAGAGCGCCTGAGCCTGGCTGAAGAGGAGCGTTCCACCGTTGCCGTGACCAACAAAAAAGCTGTCAGTGAC
GAAGCAAAGCAAGCTGTTGCTGAACCTGCTGTCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAA
AGATCCGCAGAAAATTTTTAACTATATCCAGCTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAGCCGG
GGGCAGATCGTTCTCTGTTCGATGTCAGCGGTTTCAGGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACT
GATCCACGAGCAATGATTGCTCTGATGCGGCAGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGC
GCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKPPRADAKTFDKNDVQLISQQNWFGKYQPVAAPVKQPEPVPVAET
RLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSD
EAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAVKPGADRSLFDVSGFREGDIAIALNQQDFT
DPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-118 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yghF YP_003046025.1 putative type II secretion protein GspC VFG2046 Protein 4e-118 95