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Name : yfcTU (ECB_02262) Accession : YP_003045454.1 Strain : Escherichia coli REL606 Genome accession: NC_012967 Putative virulence/resistance : Virulence Product : putative outer membrane export usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2396020 - 2398665 bp Length : 2646 bp Strand : - Note : similar to b2337-b2338 DNA sequence : ATGCCTGACCATTCTCTTTTTCGATTACGGATACTTCCGTGGTGCATTGCGCTGGCAATGTCAGGGAGTTATAGCAGTGT CTGGGCTGAAGACGACATTCAGTTTGATTCCCGTTTTCTGGAATTAAAAGGCGACACGAAAATTGATCTGAAGCGTTTTT CCAGTCAGGGATATGTTGAGCCCGGAAAATACAATTTACAGGTTCAACTAAATAAACAGCCATTGGCGGAAGAGCACGAT ATTTACTGGTACGCTGGTGAAGATGACGCGAGCAAAACTTATGCTTGTCTGACACCGGAACTGGTGGCGCAGTTTGGTTT AAAAGAAGATGTGGCGAAAAATCTGCAATGGAGCCACGATGGTAAATGCCTGAAACCCGGTCAACTGGAAGGCATGGAAA TTAAGGCTGATTTAAGCCAGTCCGCATTAGTCATTTCATTACCGCAGGCTTACCTCGAATATACCTGGCCCGACTGGGAT CCGCCTTCTCGTTGGGATGATGGCATCTCCGGGATCATCGCGGACTACAGCATCACTGCGCAAACACGACACGAAGAAAA TGGCGGTGATGACTCTAACGAGATCAGCGGCAACGGGACGGTCGGGGTTAACCTGGGGCCGTGGCGTGTGCGTGCCGACT GGCAGACCGACTATCAACATACCCGCAGTAATGATGATGACGATGAATTTAGCGGCGATGACACACAAAAAAAATGGGAG TGGAGTCGCTACTATGCCTGGCGGGCGTTACCGTCATTGAAAGCCAAACTGGCGCTGGGCGAAGATTACCTCAATTCCGA TATTTTCGACGGTTTTAACTATGTTGGCGGCAGTGTCAGTACTGACGATCAAATGTTGCCTCCCAACCTGCGTGGCTACG CGCCAGACATTTCCGGCGTGGCGCACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAG GTTCCGGCCGGGCCGTTTCGTATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAA CGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCA TGATGGGACGTCCGCAAGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCT AACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGATAAAAACTATCAGTCTGCGGCACTTGGCATCGGTCGCGATTTGTC TACGTTCGGCGCGGTTGCGTTTGATGTTACCCACTCGCATACCAAACTGGATAAAGACACCGCTTATGGCAAAGGTTCGC TGGACGGTAACTCCTTCCGTGTGAGTTATTCCAAAGACTTTGACCAGCTCAACAGTCGCGTCACCTTCGCTGGATATCGC TTCTCGGAAGAGAACTTTATGACCATGAGCGAGTACCTGGATGCCAGTGACAGCGAAATGGTCCGCACGGGCAACGACAA AGAGATGTACACCGCCACGTATAACCAGAACTTCCGCGATGCGGGTGTTTCGGTTTATCTCAACTATACCCGCCATACTT ACTGGGATCGCGAGGAGCAGACAAACTACAACATCATGCTCTCCCACTATTTCAATATGGGTAGCATTCGCAATATGAGC GTTTCCCTGACTGGCTACCGCTACGAGTATGACAACCGGGCGGATAAGGGCATGTACATTTCGCTCAGTATGCCGTGGGG CGATAACAGCACCGTTAGCTATAACGGCAACTATGGAAGTGGGACGGACAGCAGTCAGGTCGGTTATTTCAGCCGTGTCG ATGACGCGACTCACTATCAGTTGAACGTCGGCACCAGTGACAAACACACCAGCGTTGATGGCTACTACAGCCATGATGGT TCGCTGGCGCAGGTTGACCTCAGCGCGAACTACCATGAAGGGCAATACACCTCTGCGGGCTTGTCGTTACAGGGTGGCGC GACGCTTACTGCCCAAGGCGGCGCGCTTCACCGTACCCAGAATATGGGCGGGACACGCCTGTTGATTGATGCCGATGGTG TTGCCGATGTTCCGGTGGAAGGTAACGGAGCTGCTGTTTATACCAATATGTTTGGTAAAGCCGTCGTTTCTGACGTCAAT AACTATTACCGCAATCAGGCGTATATCGACCTCAACAAACTGCCAGAAAACGCCGAAGCAACCCAGTCGGTGGTGCAAGC CACGCTAACTGAAGGAGCCATTGGCTACCGCAAATTTGCTGTCATCAGTGGTCAAAAAGCGATGGCTGTGCTGCGTTTAC AAGATGGCAGCCATCCACCGTTTGGCGCAGAAGTGAAAAATGATAACCAGCAGACAGTGGGCCTCGTCGATGATGACGGC AATGTTTATCTGGCTGGGGTGAAACCAGGCGAACATATGAGCGTGTTCTGGAGTGGTGTTGCACATTGCGATATCAACTT GCCGGACCCGTTACCGGCCGATCTGTTTAACGGCTTGTTACTACCATGCCAGCATAAAGGCAACGTCGCGCCGGTTGTTC CTGATGACATAAAGCCTGTCATTCAGGAGCAGACGCAGCAGGTGACACCTGGCAATCCCCCTGTTTCTATTTCAGCTAAC CAATAA Protein sequence : MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEHD IYWYAGEDDASKTYACLTPELVAQFGLKEDVAKNLQWSHDGKCLKPGQLEGMEIKADLSQSALVISLPQAYLEYTWPDWD PPSRWDDGISGIIADYSITAQTRHEENGGDDSNEISGNGTVGVNLGPWRVRADWQTDYQHTRSNDDDDEFSGDDTQKKWE WSRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQ VPAGPFRIQDLGDSISGTLHVRIEEQNGQVQEYDISTASMPYLTRPGQVRYKVMMGRPQEWGHHVEGGFFSGAEASWGIA NGWSLYGGALGDKNYQSAALGIGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYR FSEENFMTMSEYLDASDSEMVRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDREEQTNYNIMLSHYFNMGSIRNMS VSLTGYRYEYDNRADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGTSDKHTSVDGYYSHDG SLAQVDLSANYHEGQYTSAGLSLQGGATLTAQGGALHRTQNMGGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVN NYYRNQAYIDLNKLPENAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLQDGSHPPFGAEVKNDNQQTVGLVDDDG NVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPVVPDDIKPVIQEQTQQVTPGNPPVSISAN Q |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 7e-146 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 1e-144 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 8e-145 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-145 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 9e-146 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 9e-146 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-150 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcTU | YP_003045454.1 | putative outer membrane export usher protein | VFG1548 | Protein | 4e-146 | 44 |
| yfcTU | YP_003045454.1 | putative outer membrane export usher protein | VFG0884 | Protein | 5e-146 | 44 |
| yfcTU | YP_003045454.1 | putative outer membrane export usher protein | VFG0895 | Protein | 4e-146 | 44 |
