Gene Information

Name : mrfD (PAU_00728)
Accession : YP_003039565.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : hypothetical fimbrial chaperone yfcs
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 828072 - 828815 bp
Length : 744 bp
Strand : +
Note : fimbrial chaperone

DNA sequence :
ATGAAATTGAAGAACACAATGAATGCAGCAACGATCGCTGTCCTGAGTCTGTCAGTAGTCAGTGAGGCAAGGGCAGCTAT
TGCATTGGATCGTACCAGGATCGTGTTTAACGGTGAGGAAAAATCCACCAGTATGGACATTAGCAATCAAAACAAAGAGC
TACCATATTTGGCTCAGGGCTGGATAGAGGATGAGCAGGGTAACAAAATCAACGGTCCGTTAGTAGTGACACCTCCCGTA
CAGCGAGTGGAACCGGGCGAGAGGAGTCAGGTAAAAATACAGTCATTACCAACAACAGCACAATTACCACAGGATCGGGA
GAGCTTGTTCTATTTTAACCTGCGTGAGATTCCGCCACGTAGTAAGAAACCGAACACATTACAGATTGCGTTGCAAACCC
GAATAAAACTGTTTTATCGACCAAAAGCGATTTTTGCTGGCCGCACTGAGCTGGATAACCCGTGGCAGGAAAAAATGACA
CTAACGCGTCAGGGTGACCAGTATCAGGTAAACAACCCGACACCGTATTACATCACCGTGGTCGATGCGTCGAACCAACT
TAAAGGGCCGACTGTGGCGGGTTTTCAGCCGTTGATGGTGGCACCAAAAAGTAGTGCGGTGCTGAGAGGTCATGTGGGGG
CGTTAGGGAGTGCGCCAGTGCTAACGTATATCAATGATTATGGAGGCCGACCACAACTGACTTTTAGTTGTGCAGGGAAC
CATTGTCAGGTAGCTAAACGTTAA

Protein sequence :
MKLKNTMNAATIAVLSLSVVSEARAAIALDRTRIVFNGEEKSTSMDISNQNKELPYLAQGWIEDEQGNKINGPLVVTPPV
QRVEPGERSQVKIQSLPTTAQLPQDRESLFYFNLREIPPRSKKPNTLQIALQTRIKLFYRPKAIFAGRTELDNPWQEKMT
LTRQGDQYQVNNPTPYYITVVDASNQLKGPTVAGFQPLMVAPKSSAVLRGHVGALGSAPVLTYINDYGGRPQLTFSCAGN
HCQVAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-53 53
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 1e-62 53
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-62 52
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-62 52
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-62 52
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 9e-63 52
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 8e-63 52
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 2e-65 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mrfD YP_003039565.1 hypothetical fimbrial chaperone yfcs VFG0885 Protein 4e-54 53
mrfD YP_003039565.1 hypothetical fimbrial chaperone yfcs VFG1547 Protein 6e-63 53
mrfD YP_003039565.1 hypothetical fimbrial chaperone yfcs VFG0896 Protein 5e-63 52