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Name : mrfC (PAU_00727) Accession : YP_003039564.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : outer membrane fimbrial usher protein mrfc Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 825428 - 828034 bp Length : 2607 bp Strand : + Note : outer membrane fimbrial usher protein DNA sequence : ATGGCTTTGTTTTTGGGTTTGACCACTGAACATGACAGGGTGGCCTTGGCTCGGTGTGTCCGGAAACCTCTCGCTGTTTT GGTATTGTTCGCTGTGATGGGTACTCACATTGCGTATGCGGAAGAAGAAATTGAATTTAATACGGATGTATTGGATGTTC AGGATCGCTCGCGGATTGATTTAAAAGAGTTTTCCCGTGCGGGTTATATCATGCCGGGGGATTACCAGATGATGGTACGT CTGAATAACAGTGAACTGCCGGAGATGCCGGTGACTTTTATGGTACCACCAGATGATCCGAGAGGGAGTGTGGCATGTTT GCCGCCGGATTTGGTGAAACAACTGGGTCTACGGGCGGAATGGGAAGCAAAGATTACTTGGTGGAATAATAATCAATGCT TGGAGGTTAAAACGCTCCCCGGCATGATGGTGCGTGGGGATTTGGGCAGCGATACGTTATATCTGAGTGTGCCGCAGGCT TATCTTGAATATAGCTCGCCGGATTGGGACCCGCCGTCACGTTGGGATGAGGGAGTATTGGGAATGTTGTTTGATTACAA CGTCAACGCCCAAGTATCCAAACCAACTAAGGGCAACGGAAATCAGAATGTCAGCGCCAATGGTACGACAGGGATAAACT TTGGGGCATGGCGCCTGCGGGCAGACTGGCAGGCACAATATAACCACGTCACTGGCCGGACAGGTAGCACAGAGAGGAAT TGGGATTGGAGCCGTTACTACATGTATCGGGCAATACCCCATTTGCAGGCCAAGCTGACGCTGGGTGAGGATTATCTCAA TTCAGGTATCTTTGACAGCTTCCGTTTTACCGGGGCAAGTTTGGTAACTGATGACAACATGTTGCCGCCAAACCTACGGG GTTATGCGCCAGAGGTGACCGGTGTGGCGAAAACTAATGCCAAAGTGACGATTAGTCAACAAGGGCGGGTGTTGTATGAG ACTCAGGTTGCGCCGGGGCCATTCCGTATTCAGGACATCAATGATGCAGTCAGTGGCAAATTGGATGTGCGAGTGGAAGA GCAGGGAGGTGGCGTACAGGAGTTTCAAGTTGATACTGCAAGTATTCCTTATCTGACCCGTCCGGGGCGGGTACAGTACA AACTCGCAGCAGGTAAGCCGACCAACTGGAAGCATCACGGTGAAGGCAAGGGTTTTGGTGTCGGGGAATTTTCCTGGGGG ATAAACAATGGTTGGTCACTGTATGGTGGGATACTGGGGGCAGGAGATTATAACGCATTGTCGCTGGGGCTAGGGCGTGA TCTGATGGCCTTCGGTGCTCTGTCCTTTGATGTCACTGAATCCCGCGCTCATTTACCGGATGAGAATCAAACTCTGACCG GAGGGTCTTATCGCTTGAGTTATTCCAAGCGCTTTGAAGAGTATGACAGCCAGGTGACTTTTGCGGGTTATCGCTTCTCA GAACGTGATTTCATGAGCATGAGTCAATATCTGGATCGCCGTTATCACGATGGCGATGCGGAGAGTGGAAAAGAACTCTA TAACATTATGCTGAATAAACAGTTTACGACTTTGGGGATTAGCACCTACCTGAACTACAGCCATCAGACTTACTGGAATC GACCGAATAATGATCGCTATAACGTATCTGTATCGCGCTATTTCGATATTGGTACTTTTAAGAATATTAACCTGAACTTA TCGGCTTATCGTAATAAATATGAAGGCAAGAATGACGACGGCATGTATTTGACATTGTCCTTGCCGTGGGGGCATTCAGG AACGATCAGTTATAACGCGATGGTCAATCGGAGAGGTAACTCCAACACGGTTGGTTATTACGGACGGATGAATGAGAACA GTAGTTATCGTTTAGCGGCGGGTACCAGTATTGATGGTAAGGCAGCGGCTAACGGTTATTTCACTCATTATGGTGACCGC GCCCAATTGACGACCAGTGCGAGTTATCAGGATGGACGTTACACCACGGCAGCACTTTCTATCCAAGGCGGAGTGACCGC TACGACAGAAGGCGCGGCGCTGCACCGTATCAATATGCCAGGAACAACGCGCCTGATGGTGGATACCGAAGGTGTGGGGG GAGTACCCGTGAAAGGCTTCGGTGCGATTACCCATACCAATATATTCGGTAAGGCGGTGATCTCTGATGTGAATAACTAC TATCGTAATAGTGCGAGCATTGACTTGAATAAACTGCCAGACAATGTGGAGGCAATACGTTCCGTACAACAAGCAACATT GACAGAAGGTGCGATTGGTTACCGTAAATTCCAGGTGATATCTGGAGAGAAGGCCATGGGATTGATCCGTTTATCCGATG GGAGTACGCCACCGTTTGGTGCGGCAGTGTTGAATAAGGATAAACGGGAAATCGGTATCGTCAATGATGGCGGGAATACC TACCTGAGCGGGATAAATCCAGGTGAAAAGCTGGATGTGCGCTGGGATGGTGAATTGCAGTGTGTCGTTGAGTTGCCACA CAAGTTACCAGCAGTAGAAGAGATGGCTTCCTTGTTGTTGCTGTGCCAGTTGGCCAACGGTAATAACAGCCATGGCGCGA ATGCCTCGCTATCGTCATCAACGTTGACGGCAGAGGCCCGTAACTAA Protein sequence : MALFLGLTTEHDRVALARCVRKPLAVLVLFAVMGTHIAYAEEEIEFNTDVLDVQDRSRIDLKEFSRAGYIMPGDYQMMVR LNNSELPEMPVTFMVPPDDPRGSVACLPPDLVKQLGLRAEWEAKITWWNNNQCLEVKTLPGMMVRGDLGSDTLYLSVPQA YLEYSSPDWDPPSRWDEGVLGMLFDYNVNAQVSKPTKGNGNQNVSANGTTGINFGAWRLRADWQAQYNHVTGRTGSTERN WDWSRYYMYRAIPHLQAKLTLGEDYLNSGIFDSFRFTGASLVTDDNMLPPNLRGYAPEVTGVAKTNAKVTISQQGRVLYE TQVAPGPFRIQDINDAVSGKLDVRVEEQGGGVQEFQVDTASIPYLTRPGRVQYKLAAGKPTNWKHHGEGKGFGVGEFSWG INNGWSLYGGILGAGDYNALSLGLGRDLMAFGALSFDVTESRAHLPDENQTLTGGSYRLSYSKRFEEYDSQVTFAGYRFS ERDFMSMSQYLDRRYHDGDAESGKELYNIMLNKQFTTLGISTYLNYSHQTYWNRPNNDRYNVSVSRYFDIGTFKNINLNL SAYRNKYEGKNDDGMYLTLSLPWGHSGTISYNAMVNRRGNSNTVGYYGRMNENSSYRLAAGTSIDGKAAANGYFTHYGDR AQLTTSASYQDGRYTTAALSIQGGVTATTEGAALHRINMPGTTRLMVDTEGVGGVPVKGFGAITHTNIFGKAVISDVNNY YRNSASIDLNKLPDNVEAIRSVQQATLTEGAIGYRKFQVISGEKAMGLIRLSDGSTPPFGAAVLNKDKREIGIVNDGGNT YLSGINPGEKLDVRWDGELQCVVELPHKLPAVEEMASLLLLCQLANGNNSHGANASLSSSTLTAEARN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 50 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 8e-174 | 47 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-173 | 47 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 6e-174 | 46 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 5e-174 | 46 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 7e-173 | 46 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 9e-173 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| mrfC | YP_003039564.1 | outer membrane fimbrial usher protein mrfc | VFG1548 | Protein | 5e-174 | 47 |
| mrfC | YP_003039564.1 | outer membrane fimbrial usher protein mrfc | VFG0884 | Protein | 4e-174 | 47 |
| mrfC | YP_003039564.1 | outer membrane fimbrial usher protein mrfc | VFG0895 | Protein | 2e-174 | 46 |
