Gene Information

Name : alpA1 (PAU_03977)
Accession : YP_003042806.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : putative dna binding protein
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 4633359 - 4633559 bp
Length : 201 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGAGACAACCTTAATACGTCTGGCGGATGTCATGAAAAAAGTCGGTTTAAAGAAATCATGGATTTACCATTTGAT
GCAGCAAGGCGAGTTTCCTAAATCTGTCAGTCTGGGAGCACGCTCAGTTGCATGGGTAGAAAAAGAAATTGATGAATGGA
TTATCAATAAAATCAACAATCGTAAGGAAACACAGGGATGA

Protein sequence : 
MAETTLIRLADVMKKVGLKKSWIYHLMQQGEFPKSVSLGARSVAWVEKEIDEWIINKINNRKETQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-10 56
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 56
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 56
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 5e-09 52
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 2e-11 51
unnamed CAA21398.1 - Not tested HPI Protein 3e-11 51
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 1e-10 47
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 7e-12 43
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 43
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 43
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 2e-10 42
ORF C109 AAN62202.1 phage-related protein Not tested PAGI-2(C) Protein 2e-10 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
alpA1 YP_003042806.1 putative dna binding protein VFG1118 Protein 9e-11 56
alpA1 YP_003042806.1 putative dna binding protein VFG1141 Protein 3e-12 43