Gene Information

Name : PAU_03975 (PAU_03975)
Accession : YP_003042804.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Unknown
Product : prophage p4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4630043 - 4630909 bp
Length : 867 bp
Strand : -
Note : -

DNA sequence : 
ATGGCCCTAACAGATATTAAAGTCAGAACAGCCAAGCCAACGGATAAGCAATACAAGCTGACCGATGGCAACGGTATGCA
TCTTCTCGTTCACCCAAATGGTTCAAGATACTGGCGTCTGCAGTACCGATTTGGCGGAAAGCAAAAGATGCTGGCTTTAG
GTGTATATCCTGAAGTGTCTCTTGCAGATTCCAGAGCTCGTCGTGATGAGGCTCGTAAGTTGTTGGCAAACGGCATCGAT
CCGGGAGATAAAAAGAAAAACGATAAGATTGAGCAGGAAGAAACCCGAACTTTCGAGCAGCTCGCTGTTGAGTGGCATGC
CACAAATAAAAAGTGGTCGGAAGAACATAGTCGACGAGTGCTCAAAAGCCTGGAGGACAACCTCTTTCCAGCCATAGGTA
AGCGTAATATTGCCGAACTAAAAACGCGGGACCTTTTAGCGCCCATCAAAGCTGTTGAGCTGTCTGGGCGACTTGAAGTG
GCTTCTCGGTTACAACAGCGCACTACGGCAATAATGCGTTATGCAGTACAGAGCGGTTTGCTTGACTATAATCCCGCGCA
GGAGATGGTCGGTGCTGTTGCTTCGAGTAACCGGCAGCATAGGCCTGCGTTAGAGTTGAAACGTACTCCCGAACTGCTTC
AGCGCATTGAGAGCTATACCGGTAGGTCTTTGACTCGTCTTGCCGTTGAGCTAACCCTTCTTGTCTTCATCCGCTCCAGC
GAACTACGTTTTGCTCGTTGGTCTGAGATCGATTTTGAAACATCTATCTGGACGATTCCAGCCGAGCGAGAAGCTATTGA
AGGGGTAAAGCATTCGCAGCGTGGCTCTAAAATACGTACACCTCATCTGGTGCCGCTTTCTCGTTAA

Protein sequence : 
MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPEVSLADSRARRDEARKLLANGID
PGDKKKNDKIEQEETRTFEQLAVEWHATNKKWSEEHSRRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVELSGRLEV
ASRLQQRTTAIMRYAVQSGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIESYTGRSLTRLAVELTLLVFIRSS
ELRFARWSEIDFETSIWTIPAEREAIEGVKHSQRGSKIRTPHLVPLSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 5e-67 48
int CAC39282.1 integrase Not tested LPA Protein 9e-68 48
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-68 48
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-66 47
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-66 47
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-66 47
int ACU09430.1 integrase Not tested LEE Protein 5e-65 46
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-65 46
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-65 46
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-65 46
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-59 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-57 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAU_03975 YP_003042804.1 prophage p4 integrase VFG0598 Protein 4e-66 47
PAU_03975 YP_003042804.1 prophage p4 integrase VFG0783 Protein 3e-65 46