Gene Information

Name : yfjY (PAU_03957)
Accession : YP_003042786.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : similar putative radc-like protein ykfg of escherichia coli
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 4614247 - 4614717 bp
Length : 471 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTGCATGCAATTTATCCCCGGTATTTCCTGCAAATGAGCAGCGGGTCATCCGGCGAGCGTTACGACTGCTGGAAAA
ATACCAGCGTCAGCCTAGTGAGCCTTTTACCTCCACCAGCCTCACCAAAACCTGGTTGCAACTACAGATGGCTCATCAGG
AGCGTGAAGTTTTTATCGTGTTGTATCTCGACAACCAGCACTGTCTGCTGGAACGAGAAATACTATTTACCGGCACGCTC
AGTCATACCGAGGTTCATCCCCGCGAAGTGGTTAAATTGGCCCTAAAGTACAATGCCGCAGCGGTAATTCTGGCGCACAA
TCATCCATCGGGTACGACGGACATCAGTCAGCAGGACAAACATATTACCCAGCGGATCGTGAAAGCCTTGGCACTGGTGG
AAGTGCGCGTGCTGGATCATCTCGTGGTTGGAAACGAAGTGGTGTCTTTTGCCGAGCAGGGTTTGCTTTAA

Protein sequence : 
MSACNLSPVFPANEQRVIRRALRLLEKYQRQPSEPFTSTSLTKTWLQLQMAHQEREVFIVLYLDNQHCLLEREILFTGTL
SHTEVHPREVVKLALKYNAAAVILAHNHPSGTTDISQQDKHITQRIVKALALVEVRVLDHLVVGNEVVSFAEQGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-32 57
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-33 56
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 7e-33 56
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-33 56
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-33 56
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-33 56
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 7e-33 56
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-33 56
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 7e-33 56
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-33 56
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-33 56
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-33 55
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-32 55
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 8e-33 55
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 9e-34 55
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 7e-34 55
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-33 55
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-33 55
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-33 55
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-25 54
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-25 54
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-25 54
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-22 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG1528 Protein 1e-33 56
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG1066 Protein 1e-33 56
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG0660 Protein 2e-33 56
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG1617 Protein 3e-33 55
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG1678 Protein 4e-34 55
yfjY YP_003042786.1 similar putative radc-like protein ykfg of escherichia coli VFG1119 Protein 7e-26 54