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Name : clpB (PAU_03190) Accession : YP_003042020.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : chaperone clpb Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3758894 - 3761467 bp Length : 2574 bp Strand : - Note : The proteins are thought to protect cells from stress by controlling the aggregation and denaturation of vital cellular structures. DNA sequence : ATGCGTCTGGATCGTCTTACTAATAAATTCCAGCTTGCTCTCTCTGACGCCCAGTCCCTTGCACTGGGGCATGATAATCA ATTTATTGAACCAATTCACTTGATGAGCTCACTGTTGAAACAAGGCGGTGGTTCTATTCGCCCATTATTAACGTCAATTG GGATCGATACAGGTCGTTTCAGCAATCAACTTGAGCGAGTTTTAGAACGTTTGCCGCAAGTACAAGGTGCTGGTGGTGAT GTACAACCATCTAACGACTTAATTCGGCATTTAAACTTGTGTGACAAACTAGCACAAAAGGAGGGGGATAATTTTATTTC CTCTGAATTATTTGTTCTGGCAGCACTGGAAGAACGAGGCTCATTGAGTGACATACTGAAAGCTGCTGGAGCAACAAAAG AAAAAGTTACTAAGGCAATAAAACAAATGCGTGGTGGTGAAAAAGTTTATGATCAGGGAGCGGAAGATCAACGTCAGGCT CTGAAGAAATATACTATTGATCTGACTGAACGTGCTGAACAAGGCAAACTTGATCCAGTGATTGGCCGTGATGAAGAAAT TCGCCGCACTATTCAGGTATTACAACGCCGTACCAAAAATAACCCGGTCTTAATTGGTGAGCCCGGGGTTGGTAAAACAG CTATTGTTGAAGGGCTTGCTCAACGGATTATTAATGGCGAAGTTCCAGAAGGGCTTAAAAATAAGAGGGTTCTTTCTCTG GATATGGGAGCGCTGTTAGCAGGAGCCAAATATCGTGGTGAATTTGAAGAACGCTTGAAAGGTGTGCTGAGTGATCTTTC CAAACAGGAAGGTAATGTCATTCTGTTTATTGACGAGTTGCATACTATGGTTGGTGCGGGTAAAGCTGATGGGGCAATGG ATGCCGGCAATATGTTGAAACCTGCTTTGGCTCGTGGCGAACTTCATTGTGTTGGTGCAACAACACTGGATGAATATCGT CAATACATTGAAAAAGATGCAGCGCTGGAACGCCGTTTTCAAAAAGTCTATGTTGCAGAACCTTCTGTAGAGGACACTAT CGCTATTTTGCGCGGTTTGAAAGAACGCTATGAGTTACATCATCACGTACAAATTACCGACCCTGCAATTGTCGCGGCAG CAACATTATCTCATCGTTATATCTCAGATCGTATGTTGCCAGATAAAGCTATCGATTTGATTGATGAAGCCGGAGCCAGT CTACGTATGCAAATGGATTCAAAACCGGAAGCGCTGGACCGTCTGGAACGTCGGGTCATTCAATTGAAGCTGGAACGGCA GGCACTGAAAAAAGAGTCTGATGATGCCAGTAAAAAACGGCTTGAAATGCTTAATGAAGAGCTGATCGTAAAAGAACGTG AATATTCTGAACTGGAAGAAGAATGGAAAGCTGAGAAAGCTGAGCTTACTGGTACTCAGCATATAAAAGCAGAACTGGAA AATGCCCGTATCAGCTTAGAACAGGCCCGCCGTAGTGGTGACTTGGCGAAGATGTCTGAAATTCAGTACGGAAAAATACC TGGATTGGAAAAACAGCTTGCCACAGCCACACAAGCTGAAGGTAAGAATATGAAACTGCTTCGTAACAAAGTTACCGATA CGGAAATTGCAGAAATTCTTGCTCGTTGGACAGGTATTCCTGTTGCCAGAATGCTTGAGAGTGAAAAAGATAAATTGTTG CGCATGGAGCAAGAGCTGCATAAACGTGTTATTGGTCAGAATGAAGCGGTCGATGCAGTATCTAATGCGATCCGTCGTAG CCGTGCTGGATTAGCTGATCCAAACCGTCCGATTGGTTCATTCCTGTTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGT TGTGCAAGGCGTTAGCGAATTTCCTGTTTGACAGTGATGATGCAATGGTGCGTATCGACATGTCTGAATTTATGGAAAAA CATGCTGTATCACGGTTGGTAGGAGCACCTCCAGGGTATGTTGGTTATGAAGAAGGTGGTTATCTAACAGAAGCTGTTCG TCGTCGACCTTACTCTGTTATTTTGCTGGATGAAGTAGAAAAAGCGCACCCGGATGTGTTCAATATCTTATTGCAGGTGT TGGATGATGGTCGATTGACTGATGGGCAAGGTCGTACTGTCGATTTCCGTAACACGGTTGTAATCATGACGTCTAATCTC GGGTCAGACATGATCCAGGAACGCTTTGGTGGTCTGAATTATGGTGAAATGAAAGATATGGTGATGGGAATTGTTAGCCA TCATTTTAGACCTGAATTTATTAACCGTATTGATGAAGTTGTTGTGTTCCACCCATTAGGGCGTCGGCATTTATCAGCGA TTGCAGATATCCAGTTGCAACGTTTATACAAACGTCTGGAAGAACGTGGTTATCAAGTTGCGATTACTCAGCAAGCATTG GAAATGTTGGCAGAAGCTGGGTTCGATCCTGTCTATGGTGCACGGCCATTGAAGCGAGCCATCCAGCAGGAAATCGAAAA CCCATTAGCTCAAAAAATACTTTCCGGCCAACTATTGCCAGGCAAGCCAGTGACTCTGGATGTAGAAAATAGCCAGATCG TAGCAAAGCAATAA Protein sequence : MRLDRLTNKFQLALSDAQSLALGHDNQFIEPIHLMSSLLKQGGGSIRPLLTSIGIDTGRFSNQLERVLERLPQVQGAGGD VQPSNDLIRHLNLCDKLAQKEGDNFISSELFVLAALEERGSLSDILKAAGATKEKVTKAIKQMRGGEKVYDQGAEDQRQA LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSL DMGALLAGAKYRGEFEERLKGVLSDLSKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVYVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYISDRMLPDKAIDLIDEAGAS LRMQMDSKPEALDRLERRVIQLKLERQALKKESDDASKKRLEMLNEELIVKEREYSELEEEWKAEKAELTGTQHIKAELE NARISLEQARRSGDLAKMSEIQYGKIPGLEKQLATATQAEGKNMKLLRNKVTDTEIAEILARWTGIPVARMLESEKDKLL RMEQELHKRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEK HAVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDMIQERFGGLNYGEMKDMVMGIVSHHFRPEFINRIDEVVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVAITQQAL EMLAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQLLPGKPVTLDVENSQIVAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 6e-162 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_003042020.1 | chaperone clpb | VFG2084 | Protein | 1e-101 | 41 |
