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Name : PAU_00275 (PAU_00275) Accession : YP_003039114.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : S : Function unknown COG ID : COG3523 EC number : - Position : 302194 - 305739 bp Length : 3546 bp Strand : - Note : This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed to be involved in cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. DNA sequence : ATGAACTGGCTCTCTCTTCTTCTAAAAAATATCAAAAAACCGACGATGCCGCGTCTGCCACCTCTCAAAGCCACATTCTC GCTGATACTGGCTCTCCTGCCCTGCCTGGCCCTTATCTGGATATGGTGGTGGGGGCCTGGCTGGCAATTCAAACAAACTT ACCCGCTGGAAAATCTCTCTGCCCGCTGGTTGGCAACCGCAATCATCATCTTTATGGTGCTGGGTTTTGTCGGCACAAAA ATCTGGCGTCGCTTGCAACAGCTGGAAAAATTAAAACTGGATGTGGAATTGAAAGTGGTTGATCCAGTACTGACCGATAT TGCTCGTCAGGACAGCTACCTCAACCACTGGAAAGCGCAACTTCAACGCCATCTCGGCACCTGGGATTACCTTTATCAAC GCCCCTGGTACCTCATGACTGGCAACACTGGCAGCGGCAAAACTTCGCTTATCCAGGAAGGTTACAAATTAACTGACATT GCCGCGCCAGACGCTCTGAAAGGAGAAGACGGTCTTCCACTGCACCTGCGCTGTTGGCTAGGGGAAAAAGCAGTCATTCT CGACCCAGACGGTTTCCTCATTGACCAAACAGCCATGTCGGATAGCGATAAGCCTCAACTGCCCGCCCGCCTGTGGCAAG CCCTGCTTACCTGGTTGACCGAAAACCGTCAGCGTCAGCCCCTTAATGGTATTATCCTAACAGTGGATACCCACCGTTTA CTGACCGACAACAAAGAACAGCGTGAACGGTATATCGCAGCGCTCCACCTGCGCCTGCAAGATCTGCGGTTAACCTTACA CAACCATCTTCCCTTTTATCTGGTACTGACTAAACTCGATTTGCTACATGGCTTCGGTGCCGCATTCCAATCACTGGACA GACCGCAGCGCGCGCAGATCCTGGGGGTCACTTTCAGCCTGAACGCCGCGGATGAAGACGGCTGGCGCACCGAGCTAGCA CAATTCTGGCACCAGTGGATGCAGCAACTTAACGCCGCGATGCCGGATATGATGCTCAACAAAGTGGATAGCAGCCAACG CGGCCCGCTATTCAGCTTTACCCGTCAAATTCAAGGACTGCACAGCTATCTGGTACAGCTACTGGATGGCTTGCTCTACA ACGGCGGACCGGCACAACCTGGGCTGCGCGGCGTTTATCTCACTTCGTCGAAACAAATCGGTCAGATGGATGACCCCTTC ACCCAATCTGCCGCCGTGCAGTATCATCTGGGACCTCAGGCATTTCCAACCTGGCCGGTCGCCGATACCGCCCCCTATTT CACTCGCGCGCTGTTTGAAGAGGTCCTGCTGGCCGAGCCCAATCTGGCTGCGGAGAACCGACTCTGGTTAAGTCGGAACC GCCGAAAACTGCTGACCTTCTCCACCGCCGGCTCAGTCGTGGCACTGGCCCTATGGACCGGTTGGCACTACTACTATCAG AAAAACTACCGGGCCGGCGAAGAAGTCCTGACGCAGGCTAAAAACTTCTTATCTGTTCCCCCACCCAAAGGGGAAGACCG CAACGGTAATTTACAATTACCGCTGCTCAATCCTGTCCGGCAGGCCACCCTTGCCTACGGTGATTACCATCATAAAGGGC TGCTCGCCGATATGGGGCTCTATCAGGGCTCGGACGTCGGTCCGTATGTCGAAAGTACCTATCTGCAATTGCTGTCCCAG CGCTTCCTGCCGGCCCTGATGAACGGCCTGCTGGATGACCTAAACAACGCCCCCAAAGGCAGTGAAGAAAAACTGGAAGT ACTGCGTATCATACGGATGCTGGAAGATGGCAGTGGCCGCAATAAATCGCTGGTTGAACAGTATATGCAGGAACGCTGGA GTCGCACCTTTAACGGCCAACGTCCGGTGCAGGAACAGCTGTTAACCCATCTGGACTACGCTCTGGACCACACCGACTGG CGGGCCGCACGGGAAGCTGGTGACCCAGCAGCTATCAGTAGCTTCGCGCCTTACAAGCTTCCACTCACTAATGCCCAGAA GGAACTCAGTCAGCTTTCCATTTACCAGCGGGTCTATCAGAACCTGCGCCTTAAAGCCCAGGACTCTCTGCCACCGCCGC TCAACCTGCGCGACCAGATAGGTCCTAGTTTTGACAGTATCTTTATCGCCAATAACGACAAGCAACTGATTATCCCTCAG TTTCTGACAATGAATGGTCTAAATAACTACTTCGTTAAACAGGACGACCAGCTGATTGACCTCACCGTGATGGACAGTTG GGTGCTGAACCTGTCACACAACGTCCAGTACAGCGAAACTGACCGTAAAGAAATCCAACGACAAATCACCGAGCAATATC TTGGCGATTACACCGCCACCTGGCGCAGCGCTATGAACAATCTGGATATCCTCGACTTTACCGATATCCCACAGGCCATC AGTGCCATTGAGCAAGTCATCAGTGGGGAACAACCAATCAGCCGGGCGCTGCAAATCCTCAGCGACAACACCCGCCTGCC AGTGATTAACGATACCCTACCCGCCAAAGAGCAACAGCAGTTACGCGATGCACCGGACTACCGCCTACTGGTGCGTATCA ACCGCGAATTCGCCCCGGAAACTGCCGTATTGATGGAATACGGTGAAAAAAACAGCACTCTACAGGAAGTTTACCAGAAA CTGACTGCACTACACCGTTACCTGTTGGCTATCCAGAACGCACCGGTGCCGGGCAAAGCCGCCCTAAAAGCGGTCCAGTT GCGACTTGAACAGAACAACAGTGACCCAATTTTCGACGTGCAACAACTGGCGAAAAACCTGCCGGAACCGCTGAACCGTT GGGTTGGTGAACTGGCCGAACAGGCATGGCGTGTAGTCATGATGGAAGCCGTCCGCTCATTAGAAGTCGAATGGCATGAC TCCGTAGTCAAACAGTACCAGACCTATCTGGCCGGACGCTATCCGTTCAACCCGGATGCCACTCAGGATGTCCCACTCAG TGAGTTTGACCGCTTCTTCCGACCGGGTGGAACACTCGATGCCTTCTATCAACAGAACCTGAAACCATTTGTTGAAAACA ACCTGACCTACAGCGACGACGGCAAACAACTTATCCGCCCGGACGTGCTGGCGCAACTGAAACTGGCCGACCGTATCCGC GACACCTTCTTCACCCCGCAAAACGGCCTCGGTACCCAGTTTGCCATTGAGCCTATCAGCCTGACTGGCAACAAACGCCG CAGCCTGCTCAATCTCGACGGTCAGTTACTTGATTACGCCCACGGTCGCAGCAGCATCGTGCATTTGGTCTGGCCAAACT CCATGCGCTCTGGGGTAGAAAGTCAACTCACACTGATACCAGATACCAGCGGCAAATCCCCGCGTTCAATCAGCTTCACC GGCCCATGGGCCCAGCTGCGACTGATTAACAGCGGCAAACTGACCAACGTGCGTCAGGATTCGTTTGATGTGCTGTTCTC CGTTGATGGCGGAGATATGACTTACCGTATCTACGTAGATGAATCCGACAACCCGTTTGCCGGTGGCCTGTTCAGCCGGT TCAAACTGCCTGACACCCTCTATTAA Protein sequence : MNWLSLLLKNIKKPTMPRLPPLKATFSLILALLPCLALIWIWWWGPGWQFKQTYPLENLSARWLATAIIIFMVLGFVGTK IWRRLQQLEKLKLDVELKVVDPVLTDIARQDSYLNHWKAQLQRHLGTWDYLYQRPWYLMTGNTGSGKTSLIQEGYKLTDI AAPDALKGEDGLPLHLRCWLGEKAVILDPDGFLIDQTAMSDSDKPQLPARLWQALLTWLTENRQRQPLNGIILTVDTHRL LTDNKEQRERYIAALHLRLQDLRLTLHNHLPFYLVLTKLDLLHGFGAAFQSLDRPQRAQILGVTFSLNAADEDGWRTELA QFWHQWMQQLNAAMPDMMLNKVDSSQRGPLFSFTRQIQGLHSYLVQLLDGLLYNGGPAQPGLRGVYLTSSKQIGQMDDPF TQSAAVQYHLGPQAFPTWPVADTAPYFTRALFEEVLLAEPNLAAENRLWLSRNRRKLLTFSTAGSVVALALWTGWHYYYQ KNYRAGEEVLTQAKNFLSVPPPKGEDRNGNLQLPLLNPVRQATLAYGDYHHKGLLADMGLYQGSDVGPYVESTYLQLLSQ RFLPALMNGLLDDLNNAPKGSEEKLEVLRIIRMLEDGSGRNKSLVEQYMQERWSRTFNGQRPVQEQLLTHLDYALDHTDW RAAREAGDPAAISSFAPYKLPLTNAQKELSQLSIYQRVYQNLRLKAQDSLPPPLNLRDQIGPSFDSIFIANNDKQLIIPQ FLTMNGLNNYFVKQDDQLIDLTVMDSWVLNLSHNVQYSETDRKEIQRQITEQYLGDYTATWRSAMNNLDILDFTDIPQAI SAIEQVISGEQPISRALQILSDNTRLPVINDTLPAKEQQQLRDAPDYRLLVRINREFAPETAVLMEYGEKNSTLQEVYQK LTALHRYLLAIQNAPVPGKAALKAVQLRLEQNNSDPIFDVQQLAKNLPEPLNRWVGELAEQAWRVVMMEAVRSLEVEWHD SVVKQYQTYLAGRYPFNPDATQDVPLSEFDRFFRPGGTLDAFYQQNLKPFVENNLTYSDDGKQLIRPDVLAQLKLADRIR DTFFTPQNGLGTQFAIEPISLTGNKRRSLLNLDGQLLDYAHGRSSIVHLVWPNSMRSGVESQLTLIPDTSGKSPRSISFT GPWAQLRLINSGKLTNVRQDSFDVLFSVDGGDMTYRIYVDESDNPFAGGLFSRFKLPDTLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 88 |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 56 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 56 |
