Gene Information

Name : fliP (PAU_02625)
Accession : YP_003041460.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein flip precursor
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3003242 - 3003997 bp
Length : 756 bp
Strand : +
Note : flagellar biosynthetic protein

DNA sequence : 
ATGACCAACCCTAAATTTGCGTTGTCATGCCGCCTGGCGATTACGCTTACCGCGCTTATTTTACCCATGGATGCCGCGGC
ACAATTGCCAGGGATTATTAGTCAACCACTCGCTAATGGTGGACAAAGCTGGTCACTGCCGGTTCAGACTTTAGTTTTTA
TTACCGCACTGGGTTTTATTCCCGCGGCTTTGCTCATGATGACCAGTTTTACCCGTATTATTATCGTATTGGGTTTACTG
CGTAATGCTTTAGGCACTCCATCGGCACCACCTAATCAGGTTTTACTCGGGCTGGCTCTATTTATGACATTTTTCATCAT
GTCGCCAGTTTTCGATAAAGTTTATCAAGATGCTTATCTGCCTTTTAGTGAAGATAAAATCAGCCTAGAAACCGCTTTAG
AAAATGGCGCTAAACCATTGCGGCAATTTATGTTACGTCAGACAAGAGAAAATGATTTAGCTCTGTTTGCTCGTCTTGCT
GATCAACCGCCGTTTGAAACAGCGGATTCCGTTCCTATGCGCGTCCTGATGCCAGCATTTATTACCAGCGAATTGAAAAC
AGCTTTCCAGATTGGTTTCACTTTGTTTATCCCATTTCTGATTATTGACTTGGTAGTCGCCAGTGTCTTGATGGCATTGG
GGATGATGATGGTGCCCCCTGCCACTATCTCATTGCCCTTTAAACTTATGTTGTTTGTATTAGTTGACGGTTGGCAATTA
TTACTAGGCTCTCTGGCACAAAGTTTCTACGGTTGA

Protein sequence : 
MTNPKFALSCRLAITLTALILPMDAAAQLPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLL
RNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFMLRQTRENDLALFARLA
DQPPFETADSVPMRVLMPAFITSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQL
LLGSLAQSFYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-27 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-27 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-27 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-28 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-35 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-35 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-23 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-22 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-22 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-34 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-23 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-31 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-34 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-30 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-22 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-23 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-33 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-33 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG2338 Protein 1e-93 86
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG2494 Protein 3e-71 67
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG2016 Protein 2e-63 61
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG1259 Protein 2e-61 56
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG0188 Protein 5e-32 43
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG0044 Protein 1e-32 42
fliP YP_003041460.1 flagellar biosynthetic protein flip precursor VFG0394 Protein 5e-31 41