Gene Information

Name : yfeD (PAU_01861)
Accession : YP_003040697.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein yfed homolog
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2091367 - 2092254 bp
Length : 888 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGAGTTAATTCAGTTAATTACTGAGCCGTTTATGTTTCCGTTTATGCAACGGGCAATATTTGCAGCTATTGTAAC
AGGCGCTGTGTGTGCGATGCTCTCTTGCTATCTGGTACTTAAAGGCTGGTCATTAATGGGTGATGCTATCTCTCACGCCG
TATTACCAGGGATTGTTCTGGCTTTCGCTGCTGGGATACCACTGGCTATTGGTGCATTTCTTTCTGGTATTTTTTGTGCT
TTTGCAACAGGATATCTGAAAGAACATAGCCGAATAAAAGAAGATACCGTTATGGGAATTGTCTTTTCTGGTATGTTTGC
TTTTGGTCTAGTTCTTTTTGCCCGAATGGATACCGACCAGCATCTTACCCATATTCTGTTTGGTAACATGTTAGGGATAA
CTAAAGATGAATTGAATCAAACACTATGGATTACCTGCATTACTATGATAGTAATTCTATTGAAACGCAAAGACTTCATG
CTCTACTGCTTTGATCCTAATCAAGCGCGTGTAGTGGGATTGCCCATTAAGTTTTTGCATTACGGCTTACTTTGCCTGCT
AGCAATGACAATAGTTGCTTCTTTACAAGCTGTAGGAATGATTTTGGTCATTGCAATGTTGATATCACCAGGAATCATTG
CTTTCACACTATGCCGCAGCTTTGATCGGATGTTAATTGTCGCCGTTATTGCATCAGTCAGCTCCTGTGTTCTTGGTACA
CTTATTAGTTTCCACATTGATGGAGCAACGGGTCCGTGCATTGTTATTGTTCAAGCCATTTTCTTTACACTAGCACTGAC
TTATAGCCAAATAAAACTGGCAAGAATAAAATCCAAACGTAAAACGCATCAAATTTCTCTGAAAATTTCTAACGAGCTCA
ATCAATAA

Protein sequence : 
MNELIQLITEPFMFPFMQRAIFAAIVTGAVCAMLSCYLVLKGWSLMGDAISHAVLPGIVLAFAAGIPLAIGAFLSGIFCA
FATGYLKEHSRIKEDTVMGIVFSGMFAFGLVLFARMDTDQHLTHILFGNMLGITKDELNQTLWITCITMIVILLKRKDFM
LYCFDPNQARVVGLPIKFLHYGLLCLLAMTIVASLQAVGMILVIAMLISPGIIAFTLCRSFDRMLIVAVIASVSSCVLGT
LISFHIDGATGPCIVIVQAIFFTLALTYSQIKLARIKSKRKTHQISLKISNELNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-63 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-63 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-63 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-64 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-64 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003040697.1 chelated iron transport system membrane protein yfed homolog BAC0442 Protein 4e-106 79
yfeD YP_003040697.1 chelated iron transport system membrane protein yfed homolog BAC0352 Protein 4e-64 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003040697.1 chelated iron transport system membrane protein yfed homolog VFG0528 Protein 3e-64 54