Gene Information

Name : PAU_01267 (PAU_01267)
Accession : YP_003040104.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Unknown
Product : prophage cp4-57 integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1447865 - 1448902 bp
Length : 1038 bp
Strand : -
Note : -

DNA sequence : 
ATGATGGGGCTTGGTGCTTTTCCAGCCCTTTCACTTGCTGATGCCCGAGGGTTAAGAGCGGATTATCTTTCCTTATTAGC
TAATGGCACCGACCCCCAAGTTCAGGCCGAAGTTGTTGAAGAACAGCGACAGATAGCCCTAGACAGTATTTTTTCGACTG
TTGCGGCAAACTGGTTCCAGCTCAAAAGCAAAAGCGTTACCCCTGATTACGCAAAAGACATTTGGCGCTCACTGGAGAAA
GATGTATTCCCTGCCATCGGTGAGATCCCCGTTCAGCAAATCAAAGCCCGTACATTGGTTGAAGCGCTTGAGCCAATCAA
AGCTCGTGGGGCGCTTGAGACTGTACGTCGACTGGTGCAGCGCATTAACGAGATAATGATTTATGCCGTAAACACTGGTC
TGATTGATGTCAATCCAGCATCAGGTGTTGGGATGGCCTTTGAAAAGCCCAAAAAACAAAACATGCCGACGCTGCGGCCA
GAAGAATTGCCGAAGCTGATGCGTTCTTTAGTCATGTCAAATCTGTCTGTTCCGACTCGCTGTCTCATTGAATGGAAACT
CTTGACACTTGTTCGCCCTTCTGAGGCCTCCGGTGCTCGTTGGGCAGAGATCGATCTCGATGCAAAGCTCTGGACTATTC
CAGCCGAACGGATGAAGGCTAAGCGTGAGCATATTGTTCCTTTATCGCCCCAAGCATTAGAGATTCTGGATGTGATGAAG
CCAATCAGCGCTCATCGTGAACATGTTTTTCCAAGCAGAAATGATCCAAAACAAGCTATGAATAGCCAGACGGCTAATGC
TGCTTTAAAACGCATTGGGTATGGCGGTAAATTGGTCGCGCACGGATTACGTTCCATAGCGAGTACAGCGATGAATGAAG
CTGGATTAAACCCAGACGTTATAGAAGCAGCACTTGCTCACAGTGATAAAAATGAAGTTCGTAAAGCCTACAATCGTTCA
ACCTACCTTACTCAAAGAAAAGACTTAATGAACTGGTGGGGGTTGTATTTTATTCATTCAATGAGTACACACAAATGA

Protein sequence : 
MMGLGAFPALSLADARGLRADYLSLLANGTDPQVQAEVVEEQRQIALDSIFSTVAANWFQLKSKSVTPDYAKDIWRSLEK
DVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDVNPASGVGMAFEKPKKQNMPTLRP
EELPKLMRSLVMSNLSVPTRCLIEWKLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDVMK
PISAHREHVFPSRNDPKQAMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGLNPDVIEAALAHSDKNEVRKAYNRS
TYLTQRKDLMNWWGLYFIHSMSTHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20773.1 integrase Not tested VPI Protein 3e-89 53
int AAK20803.1 integrase Not tested VPI Protein 3e-89 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 4e-89 53
unnamed AAA82714.1 integrase Not tested VPI Protein 3e-89 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 4e-89 53
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 7e-88 51
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 9e-76 49
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 4e-76 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 9e-76 49
int AAD44730.1 Int Not tested SHI-2 Protein 5e-61 41
int CAC39282.1 integrase Not tested LPA Protein 1e-59 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 8e-60 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-60 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-60 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAU_01267 YP_003040104.1 prophage cp4-57 integrase VFG1092 Protein 4e-76 49
PAU_01267 YP_003040104.1 prophage cp4-57 integrase VFG0598 Protein 8e-61 41