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Name : hofB (PAU_01128) Accession : YP_003039965.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : putative integral membrane protein involved in biogenesis of fimbriae protein transport, dna uptake (putative integral membrane protei hofb) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1281347 - 1282795 bp Length : 1449 bp Strand : - Note : - DNA sequence : ATGAACTCGCTTTCAGCAGCAGAAAACACATTAATGGAAAGAGAAATCCATGATATTTGTCATCGTTATCAATCTGTGGT TATAAAAAAAGATGATAATACTATAACAATTGCCAGCAGCGAATTACCCAATGATGAGCTATTAGCCGCATTACGTTTTA TTTCTGGCCGTATCGTTAATGTAGAAATTTGGCCGTTGGCACGAATTGAATCAGTATTGCACCAAAATATTTCACTACAC CATTTACCAGAGGAAGAATCATCTTTATTACCACCTACAACCGATATTCATGCAGATGAAAATGATGCACCAGTCATTCA GCTTATTAATCAAACTTTATTAACTTCAATTCAACGACGTGCATCTGATATTCATTTTGAACCATTCCAACAAGGTTATC GTATTCGTATCCGGGTTGATGGTGCATTACATCTCTTGTCATCTCCATCTCCTCAAATGAACGCCAGCATTGCCGCACGT CTTAAGATAATGGCGAAATTGAATATTGCCGAAAAACGGCTACCTCAAGATGGACAATTTGATTGGTATGACACACGTCA TAACTATGCTATCCGTATGGCCACCTTACCAACAATACACGGAGAAAAAATTGTACTCAGAATATTAAATACAATGCGAC AACTGTCACTGGATCAGCTAGGTATCCCAGAGCAGTTATTAAATCAATTACAACAAAAATTAACATTACCACAAGGGATG ATTTTAGTGACAGGCCCAACGGGAAGCGGAAAAACAGTAACTTTATATAGTTGTTTACAATATCTGAATCAAAACAAAAA GAATATTTGCAGTGTAGAAGATCCTGTTGAAATCCCGCTCAATGGCATTAATCAGACACAAATTAACAGTAAAATTGATC TCAATTTTGCCAAAGTATTACGAGCATTATTACGGCAAGATCCCGATGTCATCATGGTAGGAGAAATACGTGATAGCGAA ACAGCCGAAATATCAGTAAAAGCAGCACAAACAGGCCATCTGGTCCTTTCTACATTACATACTAATTCTACGGTAGATAC ATTATCTCGCCTACAAAATCTAGGCATTTCAGGCTATATGGCGGCTTCTTGTATCAAATTAATTATCGCCCAACGACTTG TCAGGAAATTATGCCTGCATTGCCGTAATCAGCAAACAGATGAAACAGTGATTAATATCGGAAATAATTCTATATTTATC AGGCAATGGATAGCGGTTGGTTGCAAACATTGTTTCTCTGGTTACTATGGCCGAACTGCTATTTATGAATTTTTGGAAAT AACACATGAACTCCAACAAATATTATCACAACAAGACCCTCAAAATTTACAAAAAACTATTATAGATCAACGAAAAGAGA CCTTGTTTTCATCTGGCATTCTATTAATAGAACAAGGAATCACTACACTAGAAGAAATTTACCAAGTTACAGGAAAAGAA GAACAATGA Protein sequence : MNSLSAAENTLMEREIHDICHRYQSVVIKKDDNTITIASSELPNDELLAALRFISGRIVNVEIWPLARIESVLHQNISLH HLPEEESSLLPPTTDIHADENDAPVIQLINQTLLTSIQRRASDIHFEPFQQGYRIRIRVDGALHLLSSPSPQMNASIAAR LKIMAKLNIAEKRLPQDGQFDWYDTRHNYAIRMATLPTIHGEKIVLRILNTMRQLSLDQLGIPEQLLNQLQQKLTLPQGM ILVTGPTGSGKTVTLYSCLQYLNQNKKNICSVEDPVEIPLNGINQTQINSKIDLNFAKVLRALLRQDPDVIMVGEIRDSE TAEISVKAAQTGHLVLSTLHTNSTVDTLSRLQNLGISGYMAASCIKLIIAQRLVRKLCLHCRNQQTDETVINIGNNSIFI RQWIAVGCKHCFSGYYGRTAIYEFLEITHELQQILSQQDPQNLQKTIIDQRKETLFSSGILLIEQGITTLEEIYQVTGKE EQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-71 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-71 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_003039965.1 | putative integral membrane protein involved in biogenesis of fimbriae protein transport, dna uptake (putative integral membrane protei hofb) | VFG1876 | Protein | 2e-72 | 46 |
| hofB | YP_003039965.1 | putative integral membrane protein involved in biogenesis of fimbriae protein transport, dna uptake (putative integral membrane protei hofb) | VFG2048 | Protein | 4e-71 | 44 |
| hofB | YP_003039965.1 | putative integral membrane protein involved in biogenesis of fimbriae protein transport, dna uptake (putative integral membrane protei hofb) | VFG0182 | Protein | 4e-71 | 43 |
| hofB | YP_003039965.1 | putative integral membrane protein involved in biogenesis of fimbriae protein transport, dna uptake (putative integral membrane protei hofb) | VFG2426 | Protein | 5e-72 | 42 |
