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Name : sycD (PAU_01061) Accession : YP_003039898.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : yopb/d chaperone sycd Function : - COG functional category : - COG ID : - EC number : - Position : 1206590 - 1207099 bp Length : 510 bp Strand : + Note : The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the DNA sequence : ATGGAGTACCAAGAAACCTCTACCACTTCTGACCAGTATGCACAAGAATTGGAGGCTTTTTTTCATGATGGTGGCACTCT TGCCATGTTGAGGGATGTCTCCAGTGATACGCTGGAACAGCTTTATTCTTTGGCGTTCAACCAGTACCAGTCAGGTAAAT GGCAGGATGCGCATAAAATATTCCAGGCTTTATGCATGTTGGATCACTATGATCACCGATTCTTTCTTGGGTTGGGAGCA TGTCGTCAAGCAATGGGGCAATTGGAACAGGCTATCCAAAGTTATAGCTATGGGGCAATGCTTGATGTTAACGAGCCTCG TTTTCCATTTCATGCTGCCGAATGTTTAATGCGACTAGGAGAGCTTGATGGGGCTGAGAGTGGATTCTACTCGGCTAAAC AACTTGCGGCAGCTTTGCCGGAACAGGCGGCTTTGGTTGCCAGTGCTAGTGCAATGTTAGAAGCCATTACGATAAAAAGG GCTCAGGAAGATGAATCTAATAGCAAATGA Protein sequence : MEYQETSTTSDQYAQELEAFFHDGGTLAMLRDVSSDTLEQLYSLAFNQYQSGKWQDAHKIFQALCMLDHYDHRFFLGLGA CRQAMGQLEQAIQSYSYGAMLDVNEPRFPFHAAECLMRLGELDGAESGFYSAKQLAAALPEQAALVASASAMLEAITIKR AQEDESNSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssH | AAO18054.1 | LssH | Virulence | TTSS locus | Protein | 6e-58 | 90 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sycD | YP_003039898.1 | yopb/d chaperone sycd | VFG0202 | Protein | 2e-46 | 70 |
| sycD | YP_003039898.1 | yopb/d chaperone sycd | VFG0380 | Protein | 1e-44 | 63 |
