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Name : lssD (PAU_01057) Accession : YP_003039894.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : type iii secretory apparatus protein pcrd Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1202740 - 1204863 bp Length : 2124 bp Strand : + Note : - DNA sequence : ATGAATCGCGGGTTTGAATTATTACGTCTGATCGGCGAGCGCAAAGATATTATGCTGGCAATATTGTTGTTGGCTGTTGT CTTTATGATGGTGTTGCCACTTCCTCCTGTCCTGCTTGATATTTTGATCGCCATTAATATGACTATCTCGGTCGTACTAA TGATGATGGCAGTCTATATAAACTCGCCCTTGCAATTTTCTGCTTTCCCAGCCGTGTTGCTGGTAACAACCCTGTTTCGC TTGGCGCTTTCAGTGAGTACCACCCGAATGATTCTGTTGCAGGCTGACGCCGGGAAGATTGTTTATACTTTTGGTAATTT CGTTGTTGGTGGAAATCTGATAGTAGGGATAGTGATCTTCCTGATTATCACCATTGTGCAATTCATCGTCATAACCAAAG GTTCGGAACGTGTGGCTGAGGTTAGCGCCCGTTTTTCCCTTGATGCGATGCCCGGTAAGCAGATGAGTATTGACGGAGAT ATGCGTGCTGGAGTTATTGACGTTAATGAAGCTAGGGAGAGGCGTAGCATTATCGAAAAAGAGAGCCAGATGTTTGGTTC GATGGATGGTGCAATGAAATTTGTCAAGGGGGATGCCATTGCTAGCCTCCTCATTATCTTTGTCAACATCCTGGGGGGAA TAACTATAGGTGTTACTCAGAAGGGGATGGCAGCGGCTGATGCATTGCAACTCTATGCTATTTTAACCATTGGTGATGGC ATGGTTGCTCAGGTCCCAGCACTGTTGATTGCTATCACGGCAGGTATCATTGTTACTCGGGTTTCATCAGAAGATTCTTT GGATCTGGGTAATGAGATTGGTGATCAGGTCGTCGCTCAACCTAAGGCGCTGCTAATTGGTGGTGTTTTATTGGTGTTGT TTGGTCTTATTCCTGGGTTTCCGACATTAACCTTTTTAATGCTTGCGCTGGTGGTAACTGGAGGCGGTTATTTCTTGTTC CAACGTCAGCAGCAAGCTAACGCCAACCAGCAAACTGACCTTCCCAGCTTGTTAGCCCAAGGGGCTGGTGCCCCGGCAGC TAAACCTAAATCTAAGCCTAAAATCGGTAGTAAGGCCAAGGGTGGGAAACTTGGGGAAAAAGAGGAATTCGCTATGACGG TTCCTTTACTTATTGATGTGGATGCTGGGTTACAAGCTGAACTGGAAGCGATTTCGCTAAATGATGAGTTAATACGGGTA CGACGTGCCCTCTATTTGGACTTGGGAGTCCCATTTCCGGGTATCCACTTACGCTTTAATGAGGGTATGAAGGAAGGGGA ATACTTGATCCAACTACAAGAGGTACCTGTTGCCCGTGGTCGATTGCGTTCGGCACACTTGCTGGTACAGGAACCAGTCA GCCAGTTGGAATTGTTGGCTATCCCCTATGAGGAAGGTGAACCACTATTACCTAATCAACCAACTTTGTGGGTAGATGAA GCGCATCAAGAACGTTTATCTAAGTCCGGATTGGCGGTTTTATCAATGTCTCAAGTGATCACATGGCATTTGTCACATGT GCTGCGAGAATATGCGGAAGATTTTATTGGCGTTCAGGAAACCCGTTATCTTCTGGAGCAGATGGAAGGCAGTTACGGTG AGTTGGTCAAGGAGGCTATGCGCATAATCCCATTACAGCGGATGACCGAGATATTGCAACGGTTGGTAGGAGAGGACATC TCTATTCGTAATACACGTGCGATTCTCGAAGCTATGGTAGTGTGGGGGCAGAAGGAGAAGGATGTGGTGCAATTGACGGA ATATATTCGCAGCAGTCTCAAGCGTTATATCTGTTACAAGTATGCTAATGGCAACAACATCTTGCCTGCTTATCTGTTAG ATCAACAGGTGGAGGAACAGATCCGTAGTGGTATTCGTCAGACAAGTGCTGGTAGCTACCTGGCACTTGACCCCGCGGTG ACGCAAAATTTCCTTGAACAGATGCGAAAAACGGTGGGTGATTTAACACAGATGCAGAATAAACCGGTGCTGATCGTATC AATGGATATTCGTCGCTATGTACGTAAGTTAATTGAAGGTGATCATCACAGCTTACCTGTGCTCTCGTATCAGGAATTGA CTCAACAGATCAATATCCAACCTCTTGGTCGGGTTTGTCTATGA Protein sequence : MNRGFELLRLIGERKDIMLAILLLAVVFMMVLPLPPVLLDILIAINMTISVVLMMMAVYINSPLQFSAFPAVLLVTTLFR LALSVSTTRMILLQADAGKIVYTFGNFVVGGNLIVGIVIFLIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGD MRAGVIDVNEARERRSIIEKESQMFGSMDGAMKFVKGDAIASLLIIFVNILGGITIGVTQKGMAAADALQLYAILTIGDG MVAQVPALLIAITAGIIVTRVSSEDSLDLGNEIGDQVVAQPKALLIGGVLLVLFGLIPGFPTLTFLMLALVVTGGGYFLF QRQQQANANQQTDLPSLLAQGAGAPAAKPKSKPKIGSKAKGGKLGEKEEFAMTVPLLIDVDAGLQAELEAISLNDELIRV RRALYLDLGVPFPGIHLRFNEGMKEGEYLIQLQEVPVARGRLRSAHLLVQEPVSQLELLAIPYEEGEPLLPNQPTLWVDE AHQERLSKSGLAVLSMSQVITWHLSHVLREYAEDFIGVQETRYLLEQMEGSYGELVKEAMRIIPLQRMTEILQRLVGEDI SIRNTRAILEAMVVWGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLLDQQVEEQIRSGIRQTSAGSYLALDPAV TQNFLEQMRKTVGDLTQMQNKPVLIVSMDIRRYVRKLIEGDHHSLPVLSYQELTQQINIQPLGRVCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 0.0 | 95 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 2e-100 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lssD | YP_003039894.1 | type iii secretory apparatus protein pcrd | VFG0384 | Protein | 0.0 | 82 |
| lssD | YP_003039894.1 | type iii secretory apparatus protein pcrd | VFG0198 | Protein | 0.0 | 80 |
| lssD | YP_003039894.1 | type iii secretory apparatus protein pcrd | VFG0064 | Protein | 3e-170 | 58 |
