Gene Information

Name : sctO (PAU_01051)
Accession : YP_003039888.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein scto
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1198534 - 1198995 bp
Length : 462 bp
Strand : -
Note : -

DNA sequence : 
ATGATTAGCCGTTTACAACGCATAAAAGCATTGCGCGTCAAACGCGCTGAACAACATTTGTCATTACAACAAATGAAGCT
GCAAACAGCTCATCAGCACCATGAACAAGCCTTGCGAAACGTGCAAAATTACAGTCAGTGGCGAATAGCAGAAGAACAGC
GTCTTTTTAAACTGTGTCAAGGCCAGCCCATTGACCGCAAAGGGCTTGAACGTTGGCAGCAACAAGTTGCTCTGTTGCGC
AAAAATGAAGCACAACTGGAGAGGAAAGCCGCTGAAATACTCGAACAAGTAGAGCTAGAACTCCGCCAATTACAAGAGTG
CCAACGCGTATTGCATCACGCACGCCGGCAGCAAGAAAAATTTAATGAGTTAGGTCGTCAAGAACAAGAGGCGCTCCGTA
TCCAAGGTGAATACCAAGAAGAGCTGGAGCAAGAAGAGTTCCACCGCCAAGCAAGAGTATAA

Protein sequence : 
MISRLQRIKALRVKRAEQHLSLQQMKLQTAHQHHEQALRNVQNYSQWRIAEEQRLFKLCQGQPIDRKGLERWQQQVALLR
KNEAQLERKAAEILEQVELELRQLQECQRVLHHARRQQEKFNELGRQEQEALRIQGEYQEELEQEEFHRQARV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscO AAO18043.1 LscO Virulence TTSS locus Protein 7e-39 84

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctO YP_003039888.1 type iii secretion component protein scto VFG0391 Protein 5e-17 46
sctO YP_003039888.1 type iii secretion component protein scto VFG0191 Protein 2e-11 45