Gene Information

Name : sctR (PAU_01048)
Accession : YP_003039885.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein sctr
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1195620 - 1196273 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence : 
ATGATCCAGCTACCGAACGAGCTGGACCTCATCATCGGGCTTGCTCTACTCTCTCTGCTTCCCTTTATTGCAGTGATGGC
TACCTCTTTTCTCAAACTGGCTGTGGTATTTTCCTTACTGCGTAACGCCTTGGGAGTACAACAAATCCCGCCCAACATGG
CTATGTATGGGTTAGCAATTATCCTCACAATCTATGTGATGGCTCCGGTAGGTTTCGCTACTCAGGATTACCTGCGTCAA
AATGAAGTTTCATTCAGCAATGCACAATCAGTAGAAAAATTCCTGGAAGAAGGCATGGCACCTTACCGGAACTTTCTAAA
ACAACATATTAAGTCCAGTGAACGAACTTTTTTTATCGATAGCACCCGACAAATTTGGCCAAGCCAGTATGCGAACCGGC
TGGAGCCAGATAGTTTGTTAATCTTACTACCAGCCTTTACGGTCAGTGAATTAACCCGGGCATTTGAAATTGGGTTTCTT
CTTTATTTGCCATTTATTGCAATCGATCTCATTATTTCTAACATTCTGCTCGCAATGGGGATGATGATGGTCTCTCCTAT
GACCATTTCCCTCCCTTTCAAGTTACTACTATTTGTCTTGCTTGATGGCTGGACACGCCTGACACATGGCCTTGTCATCA
GTTATGGAAGTTAA

Protein sequence : 
MIQLPNELDLIIGLALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQ
NEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQYANRLEPDSLLILLPAFTVSELTRAFEIGFL
LYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTRLTHGLVISYGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-79 97
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-48 59
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-42 55
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-42 55
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-42 55
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-41 54
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-41 54
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 52
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 52
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-39 51
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-39 51
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-39 51
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-39 51
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-39 51
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 51
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-38 50
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-38 50
escR AAK26700.1 EscR Virulence LEE Protein 6e-38 50
escR AAL57527.1 EscR Virulence LEE Protein 6e-38 50
escR CAC81847.1 EscR protein Virulence LEE II Protein 6e-38 50
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-38 50
escR CAI43889.1 EscR protein Virulence LEE Protein 6e-38 50
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-38 50
escR AAC31528.1 L0049 Virulence LEE Protein 6e-38 50
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-38 50
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-38 50
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-37 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-35 49
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-35 49
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-35 49
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-34 49
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-37 49
escR AAC38369.1 EscR Virulence LEE Protein 4e-37 49
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-37 49
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 8e-36 47
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 8e-36 47
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-36 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-36 47
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-34 46
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-34 46
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-35 46
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 44
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-28 44
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-34 44
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 4e-34 44
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-27 43
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-27 43
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 3e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctR YP_003039885.1 type iii secretion component protein sctr VFG0188 Protein 2e-74 84
sctR YP_003039885.1 type iii secretion component protein sctr VFG0394 Protein 4e-72 83
sctR YP_003039885.1 type iii secretion component protein sctr VFG0044 Protein 1e-45 57
sctR YP_003039885.1 type iii secretion component protein sctr VFG0519 Protein 2e-42 55
sctR YP_003039885.1 type iii secretion component protein sctr VFG0827 Protein 3e-38 50
sctR YP_003039885.1 type iii secretion component protein sctr VFG0715 Protein 2e-37 49
sctR YP_003039885.1 type iii secretion component protein sctr VFG1773 Protein 1e-37 46
sctR YP_003039885.1 type iii secretion component protein sctr VFG0551 Protein 2e-28 44
sctR YP_003039885.1 type iii secretion component protein sctr VFG1012 Protein 4e-32 43
sctR YP_003039885.1 type iii secretion component protein sctr VFG2338 Protein 4e-23 43
sctR YP_003039885.1 type iii secretion component protein sctr VFG1259 Protein 1e-26 41