Gene Information

Name : sctS (PAU_01047)
Accession : YP_003039884.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein scts
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1195351 - 1195617 bp
Length : 267 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAATGCTGATATTTTACATTTCACCAGCCAATCCCTCTGGTTAGTGTTAATCCTTTCCCTGCCACCTGTATTGAT
GGCTGCCGTGGTGGGAACATTGGTTTCTCTGATCCAGGCACTCACCCAAATACAAGAACAAACACTGGGCTTTGTCATCA
AATTAATTGCGGTTATTATCACCCTGTTTGCCACTGCTACCTGGCTTGGCAATGAACTCTATAGTTTCGCCAATATGGCC
TTTTCCAAGGTGCCTCTGATCAAATGA

Protein sequence : 
MSNADILHFTSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVIITLFATATWLGNELYSFANMA
FSKVPLIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 8e-33 96
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-11 52
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 1e-11 52
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 2e-09 52
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 2e-09 52
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 2e-11 52
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-11 52
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 4e-11 50
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 4e-11 50
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 4e-11 50
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 4e-11 50
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 3e-11 50
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 1e-13 49
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-08 47
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-08 47
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-08 47
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 1e-08 47
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-13 44
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-13 44
escS CAC81848.1 EscS protein Virulence LEE II Protein 1e-13 43
unnamed AAL06355.1 EscS Virulence LEE Protein 8e-14 43
escS AAK26701.1 EscS Virulence LEE Protein 1e-13 43
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 2e-13 43
escS AAL57528.1 EscS Virulence LEE Protein 1e-13 43
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 2e-13 43
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 7e-12 43
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 2e-10 43
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 2e-10 43
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 2e-10 43
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 1e-11 43
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 9e-08 42
escS CAI43888.1 EscS protein Virulence LEE Protein 3e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctS YP_003039884.1 type iii secretion component protein scts VFG0395 Protein 1e-28 78
sctS YP_003039884.1 type iii secretion component protein scts VFG0187 Protein 1e-22 74
sctS YP_003039884.1 type iii secretion component protein scts VFG0043 Protein 3e-15 54
sctS YP_003039884.1 type iii secretion component protein scts VFG0520 Protein 1e-11 50
sctS YP_003039884.1 type iii secretion component protein scts VFG1013 Protein 2e-09 47
sctS YP_003039884.1 type iii secretion component protein scts VFG0550 Protein 4e-09 47
sctS YP_003039884.1 type iii secretion component protein scts VFG1772 Protein 4e-11 43
sctS YP_003039884.1 type iii secretion component protein scts VFG2132 Protein 4e-11 41
sctS YP_003039884.1 type iii secretion component protein scts VFG2454 Protein 6e-05 41