Gene Information

Name : sctT (PAU_01046)
Accession : YP_003039883.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein sctt
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 1194566 - 1195354 bp
Length : 789 bp
Strand : -
Note : -

DNA sequence : 
ATGACACTACAAGAGTTCCAGCAACACATACTTGCTTATACCCTGCTGTTACCACGCATTATGAGCTGTTTTGTGATATT
TCCTGTCCTCAGCAAACAGATGCTGGGAGGGGGAATGATTCGCAACGGTGTGGCCTGCTCATTGGCTCTTTATGCTTATC
CAACAGTGGCAAATAATCCACTACCCACATTCGGCAGCCTGGAATTGATGCTATTGCTTGGTAAGGAAGTTCTGCTTGGC
CTATTAATTGGCTTTATCGCTTCTATCCCATTTTGGGCCATGGAAGCAACGGGTTTTATCGTAGATAACCAGCGGGGGGC
AACCATGGCTTCAGTACTTAATCCTTCACTGGGAAGCCAAACCTCGCCTACTGGTCTGTTATTAACTCAAACCCTGATAA
CTCTTTTTTTCTCCGGCGGCGCTTTTCTTAGTCTACTTGGTGCCTTATTTCAGAGTTATAACAGTTGGCCGGTAACTCAG
TTTTTCCCCACAATTACCAATCAATGGATCAGTTTTTTCTACGGTCAGTTCAGCTACCTATTGCAACTATGTGCCCTAAT
GGCTGCCCCCTTGTTGATAGCCATGTTTCTGGCAGAATTTGGATTAGCACTGATTAGCCGTTTTGCTCCTTCTCTCAACG
TCTTCGTGTTAGCAATGCCGATCAAGAGCGCAATCGCCAGCTTGTTACTGGTTATCTATATCCAGTTACTGATGCACTAT
GCCTATGATAAGGTGTTGTTAATATTCTCCCCTCTACACATGTTAACCCCTATCCTGGAGGCCCCATGA

Protein sequence : 
MTLQEFQQHILAYTLLLPRIMSCFVIFPVLSKQMLGGGMIRNGVACSLALYAYPTVANNPLPTFGSLELMLLLGKEVLLG
LLIGFIASIPFWAMEATGFIVDNQRGATMASVLNPSLGSQTSPTGLLLTQTLITLFFSGGAFLSLLGALFQSYNSWPVTQ
FFPTITNQWISFFYGQFSYLLQLCALMAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYIQLLMHY
AYDKVLLIFSPLHMLTPILEAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 2e-83 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctT YP_003039883.1 type iii secretion component protein sctt VFG0186 Protein 4e-58 73
sctT YP_003039883.1 type iii secretion component protein sctt VFG0396 Protein 4e-58 71