Gene Information

Name : sctU (PAU_01045)
Accession : YP_003039882.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein sctu
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 1193517 - 1194569 bp
Length : 1053 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTGGAGAGAAGACTGAAAAACCTACCCCCAAGAAACTCAGAGATGCCCGCAAGAAGGGCCAGGTAACTAAGAGTAC
AGAAATAGTCTCTACCTCCTTAATCTTGGGGCTGGTTGGTATGATAATGGTTATGTCTGATTACTATTTGGAACATCTGA
GTAAACTGATGTTGATCCCAGCTAACCTACTGGAAAAGCCGTTCCCTCAAGCTCTCAATCACGTCGTTGAAAACCTGATG
CAGGAACTGGTCTACCTCTGCCTGCCAATTCTGAGCGTTTCCGTTTTACTATCGCTGGCATCACACTTCGCTCAATACGG
TTTCCTGCTAAGTGGGCATTCAATCAAGCCTGATATCAAAAAAATCAACCCTGTTGAAGGTGCTAAAAGAATTTTTTCTA
TCAAAAGTTTGGTGGAGTTCATCAAATCGATACTTAAGGTAGGTCTACTCTGCACCCTAATCTGGGTTACTCTGGAAGGC
AATCTACAGGGGCTACTAAATCTACCGGAATGTGGGTCAAGATGTATTATTCCTGTACTTGGTATGATGCTAACCCAGTT
AATGACTGTATGCGGTATCGGATTTATTATTATTTCTATCGCCGATTATGCTTTTGAACACTACCAACATATCAAGCAGC
TTAGGATGAGCAAAGACGAAATTAAACGGGAATATAAAGAAAGTGAAGGCAGTCCAGAAATCAAAAGCAAACGACGCCAA
TTCCATCAAGAATTACAATCAAGCAATATGCGCGCCAGCGTCAAGAATTCATCAGTGATCGTTGCCAACCCAACCCACAT
TGCCGTTGGTATCCGTTATAAGAAAGGCGAAACCCCACTGCCTCTTATCACGCTTAAGTTCACCGACGCACAGGCCCTAC
AAGTTCGACGCATTGCTGAAGAAGAAGGCATCCCGGTGTTACAGCGAATTCCTCTCGCCAGAGCACTTTATCAAGATGGT
CTCATCGACCACTATATTCCTGCTGATCTTATCCAAGCCACCGCAGAGGTTTTACGTTGGTTAGATCAATGGCAGGATCG
TTCTCCTGAATGA

Protein sequence : 
MSGEKTEKPTPKKLRDARKKGQVTKSTEIVSTSLILGLVGMIMVMSDYYLEHLSKLMLIPANLLEKPFPQALNHVVENLM
QELVYLCLPILSVSVLLSLASHFAQYGFLLSGHSIKPDIKKINPVEGAKRIFSIKSLVEFIKSILKVGLLCTLIWVTLEG
NLQGLLNLPECGSRCIIPVLGMMLTQLMTVCGIGFIIISIADYAFEHYQHIKQLRMSKDEIKREYKESEGSPEIKSKRRQ
FHQELQSSNMRASVKNSSVIVANPTHIAVGIRYKKGETPLPLITLKFTDAQALQVRRIAEEEGIPVLQRIPLARALYQDG
LIDHYIPADLIQATAEVLRWLDQWQDRSPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 6e-158 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctU YP_003039882.1 type iii secretion component protein sctu VFG0397 Protein 9e-115 72
sctU YP_003039882.1 type iii secretion component protein sctu VFG0185 Protein 2e-102 71