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Name : sctD (PAU_01036) Accession : YP_003039873.1 Strain : Photorhabdus asymbiotica ATCC 43949 Genome accession: NC_012962 Putative virulence/resistance : Virulence Product : type iii secretion component protein sctd Function : - COG functional category : - COG ID : - EC number : - Position : 1184517 - 1185791 bp Length : 1275 bp Strand : - Note : - DNA sequence : ATGAGTTGGAAAATTCGCTTTTACCGCGGACTGAATAAAAGTATTGAGGTCAATTTGGCTGAAGGGCGTTTAGTCATCGG CTCAGACCCTCTACAGGCAGACATCGTTCTGGTAGATGAAGGAATTGCCCCCGTGCACCTCATCTTAGAAGTAGAACCAG ACTCAGTCCGCTTGTTGGAATGGGCGGGTGAAACAACACCAAGTCAGAATGGCGAACCGCTGTCGCCAAATGCCTTATTG CAAGCACTGGCCCGTCAGGAAGCAGGTCCATTGCTATGGGCTTTCTGCGACCAACAACATACCTTCCCAGACCAACTTGC CGAGCCGGTGATAACACCACACCAGCGCCCAGTCCGGCAAAATCGCAACCGGATTGCTGGTTGGATGTTAATACTCTGTT TGGTAGTCGCACTTGTTTTTCTAGCGTTGCTTGGACATGAAGGATGGCAAAGAAGCAACATGTCCAATGGTATGGCCGAG CAAGAACTACGTCGTTTTCTCAATAGCAACTCAGCCTATCATCAGGTTAGTGTGCAAATGATGCCTAATGATGAACCTCT ACTGATAAAAGGTTATGTGGACCGCAACCACCATCGGCTGGCACTGCAACAATATCTTGATACCCACCCGCTTAATTATC GCCTGGAGTTACGTACCATGGAGGAATTACTTCAAGGAGTGGATTTTATCTTACAGAAATTAGGTCATACCCAAGTCCAA AGCGGCAATGGCAAACAACCTGGCTGGATTCGTCTTACCGGAGAATTAACTGATTCTGAGCAGAACTGGAATGATATCGA ATCATTACTTAAACGCGACGTTCCGGGCTTACTTGGTATAGAAAACCAAACGATGCAAACCGGTGGCCATCTCAAGAGAC TAGATATGCTACTGGCTAAACATGATTTGCCCAACACACTGACCTATCAGGATAAAAGTGATCGTATCGAGTTCACAGGT CAACTGGATGAGCACCAAACTCACAGCTTCTACCGCTTACAGCAAGTATTTAAGCAAGAATTCGGCAACCGACCAGAACT GGTACTGCTAAACAACAACCGGCTAGCCCGCAATAATGATGAACTCAATTTCGATGTCCGGGCGGTTTCCTTGGGGCGTG TACCCTACGTGGTACTAAAAAATAACCTGCGCTACCCCGTTGGAGCAACAACAGAAAATGGTTTAAGGATCGAAGCAATC CGCAGCGATGCCATTATCATTATCAAAGGTGAACAGCAATTTATCATCAAACTTAACAGGAGCCCCGCTTTATGA Protein sequence : MSWKIRFYRGLNKSIEVNLAEGRLVIGSDPLQADIVLVDEGIAPVHLILEVEPDSVRLLEWAGETTPSQNGEPLSPNALL QALARQEAGPLLWAFCDQQHTFPDQLAEPVITPHQRPVRQNRNRIAGWMLILCLVVALVFLALLGHEGWQRSNMSNGMAE QELRRFLNSNSAYHQVSVQMMPNDEPLLIKGYVDRNHHRLALQQYLDTHPLNYRLELRTMEELLQGVDFILQKLGHTQVQ SGNGKQPGWIRLTGELTDSEQNWNDIESLLKRDVPGLLGIENQTMQTGGHLKRLDMLLAKHDLPNTLTYQDKSDRIEFTG QLDEHQTHSFYRLQQVFKQEFGNRPELVLLNNNRLARNNDELNFDVRAVSLGRVPYVVLKNNLRYPVGATTENGLRIEAI RSDAIIIIKGEQQFIIKLNRSPAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 5e-147 | 84 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctD | YP_003039873.1 | type iii secretion component protein sctd | VFG0212 | Protein | 2e-89 | 50 |
| sctD | YP_003039873.1 | type iii secretion component protein sctd | VFG0403 | Protein | 3e-66 | 44 |
