Gene Information

Name : sctJ (PAU_01031)
Accession : YP_003039868.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : type iii secretion component protein sctj
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 1182046 - 1182783 bp
Length : 738 bp
Strand : -
Note : -

DNA sequence : 
GTGAAGAAACCCTATATAATCTGCGTCTTGCTCGCTGTCCTGATGCTAGCTGGCTGTAAAATCGAACTCTACACAGGAGT
TAGCCAAAAAGAAGGCAACGAAATGTTAGCCTTACTCAGGGAAGCGGGCATTTCCTCTGATAAACAGCCAGATAAAGATG
GCAATATCAAGTTGTTGGTAGAAGAATCTGATGTCGCACAAGCTGTTGAGGTACTCAAGAGTAAAGGGTATCCACGAGAA
AACTTCTCTTCGCTACAAGATGTCTTCCCCAAAGATGGGCTTATCTCTTCCCCGGTGGAAGAACGTGCTCGGCTCAACTT
CGCCAAAGCACAAGAGATCGCCCGAACGCTTTCTGAGATCGACGGAGTACTCGTGGCACGCGTACATGTAGTCTTACCGG
AAGAGCAAGACAGACTGGGTAAAAAATTATTGCCAGCCTCTTCTTCCGTGTTTATCAAACACGCTGCTGACGTTCAATTG
GATACCTACATCCCGCAGATAAAGCAATTGGTCAATAACAGCATTGAAGGGCTGAGTTATGATCGTATCAGCGTTGTATT
AGTTCCCGCAGCTGGCGTGCGTCAAGTACCATTAGCACCAAGGTACACGACTTTATTCTCTATCCAAGTCACTGAAGAAT
CACAGGGCCGTCTGGTCGGGCTTTTAGTTCTATTATTAGCCTTGCTATTTATCAGCAACCTGGCTCAGTTCCTGTGGCAC
CGAAGCAAGGTGCAATAA

Protein sequence : 
MKKPYIICVLLAVLMLAGCKIELYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESDVAQAVEVLKSKGYPRE
NFSSLQDVFPKDGLISSPVEERARLNFAKAQEIARTLSEIDGVLVARVHVVLPEEQDRLGKKLLPASSSVFIKHAADVQL
DTYIPQIKQLVNNSIEGLSYDRISVVLVPAAGVRQVPLAPRYTTLFSIQVTEESQGRLVGLLVLLLALLFISNLAQFLWH
RSKVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 9e-103 96
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 5e-30 45
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 4e-38 42
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctJ YP_003039868.1 type iii secretion component protein sctj VFG0218 Protein 1e-79 81
sctJ YP_003039868.1 type iii secretion component protein sctj VFG0409 Protein 9e-78 72
sctJ YP_003039868.1 type iii secretion component protein sctj VFG0051 Protein 4e-35 44