Gene Information

Name : atoC (PAU_01021)
Accession : YP_003039858.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Virulence
Product : acetoacetate metabolism regulatory protein atoc
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1173206 - 1174231 bp
Length : 1026 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCAGAAAGTCAATCAACGACACCGAGCCTCATCCGACAGCTACGGCTGGGATCGGATCTTAACTAACAGCCCGAA
AATGATGGCTTTGTGCCGTGATACAGCGAAAATTGCCCGTAGCCATGCCAGAGTATTGATTACCGGCGAAAGCGGCACCG
GTAAGGAACTCATCGCTAAGGCCATTCATTATCACAGTCCGCGGGCTAAAGGGCCGTTCATCAAAATTAACTGCGGCGCT
TTACCCGAGTCCTTACTAGAAAGTGAATTATTCGGCCATGAAAAAGGAGCGTTTACTGGCGCACAAATACAGCGTCAGGG
GCTATTTGAACGCGCCAATCAGGGCACCCTGCTACTTGATGAAGTTGGCGAAATGTCCCTCAATCTACAGGCTAAACTAC
TACGCGTTTTACAAGAAAAAGAATTCGAACGTCTTGGCGGTAACCAAACCATCAAAACCGATATTCGTTTGATTGCAGCA
ACCAACCGTAATCTCGCGACCATGGTGGAACGAGCAGAATTTCGTCAGGATCTGTTTTACCGCCTTAACGTCATTCATCT
TTCACCCCCTCCGCTACGGGAACGTCCTGAGGATATCGCCCTGCTGGCCCAGCATTTCCTACAAAAATTCAGTGCAGAAA
ACAATAAAGAGATCATCGAATTAGATGCCAGTACATTGCCAATTCTGGCGGCGTATCACTGGCCGGGCAATGTTCGGGAA
CTCTCTAACGCGCTGGAACGTGCGGTCATCATGAGTACGGGATCAGTTATTTTCCCCGACGATCTGCCAGAACATCTGTT
ATTCAAACCACCTTTACCACTAAGTTCTGAACACCAACAGACACTGGAACGCAGTCATAGTCTGAAAGAAAGCATTAAAG
CCTATGAACGTAAACTGATTAGTGCTGCGCTAGCAAACAATCAAGGCAATCGGTCACAAACCGCTCGAATGTTAGGGATC
AGTCGCCGGGCACTGATGTATAAACTTCAAGAATACCGTATCGACCCGCTCACTCTGACAGAATAA

Protein sequence : 
MKQKVNQRHRASSDSYGWDRILTNSPKMMALCRDTAKIARSHARVLITGESGTGKELIAKAIHYHSPRAKGPFIKINCGA
LPESLLESELFGHEKGAFTGAQIQRQGLFERANQGTLLLDEVGEMSLNLQAKLLRVLQEKEFERLGGNQTIKTDIRLIAA
TNRNLATMVERAEFRQDLFYRLNVIHLSPPPLRERPEDIALLAQHFLQKFSAENNKEIIELDASTLPILAAYHWPGNVRE
LSNALERAVIMSTGSVIFPDDLPEHLLFKPPLPLSSEHQQTLERSHSLKESIKAYERKLISAALANNQGNRSQTARMLGI
SRRALMYKLQEYRIDPLTLTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAT96161.1 HrpS Virulence T-PAI Protein 1e-42 42
hrpS AAT96215.1 HrpS Virulence T-PAI Protein 1e-42 42
hrpS ABQ88367.1 HrpS Virulence Hrp PAI Protein 6e-42 42
hrpS AAA17650.1 positive regulatory factor Not tested Hrp PAI Protein 6e-42 42
hrpS AAC35800.1 transcriptional regulator Virulence Hrp PAI Protein 2e-42 41
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 2e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_003039858.1 acetoacetate metabolism regulatory protein atoc BAC0467 Protein 1e-68 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_003039858.1 acetoacetate metabolism regulatory protein atoc VFG1214 Protein 2e-63 46