Gene Information

Name : PAU_01003 (PAU_01003)
Accession : YP_003039840.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Unknown
Product : putative phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1150358 - 1151572 bp
Length : 1215 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTAAATGCCAGACAGGTAGAGTCAGCAAAGGCTAAAGCTACCGATTATAAATTAGCTGATGGTAGTGGTTTGTA
TTTACTGGTGAAGAAGAACGGAGCGCGTTATTGGCGTCTAAAATATCGGATTGCAGGTAAAGAAAAACTGCTTGCATTGG
GGATATACCCTAATTTGTCTTTAGCTAATGCCAGAGCCAAAAGAGATGAAGCTAAGCAACACTTGGCTAATGGTGTTGAT
CCCGCTGAGGTGAAGAAGACAAAGCAGAAGGAGATAATCAGGCAAGCAACTAATACTTTTGAAGCCATAGCTAAAGAATG
GCATTCCTATAAATTGCCGAATTGGTCTGTTGGCTATGCTGATGATTTACTTGAATCCTTTAATAAAGACATATTTCCTT
ATATTGGCAAAAGAATAATAACGGATATTAAGCCTCTAGATATGTTGGAAACTCTTCGTAAAATGGAACAGCGTGGCGTT
CTGGATAAGCTTAAGAAGATTCGTCAAGCTTGTAGTCAGGTATTTAAATATGCGATTGTAACTGGTAGAAGTGAATATAA
TCCTGCTGCTGAATTATCTGGAGCGTTAGCATCACCGAAAGTTAAACATTTTCCACATCTTTTAGCCGATGAATTACCTC
TTTTCCTGCAAACATTATCTCAATACAAGGGAAGTATCATTACTCAAATAGCGACAAAACTATTATTGTTAACCGGTGTT
CGAACTATAGAACTTAGAGCTGCAAAGTGGGATGAATTAGATTTAGATAGAAAGATATGGGAAATTCCACTAGAACGTAT
GAAGATGCGCCGCACACATATCGTTCCACTATCTGAGCAGGTTCTGTCTCTGTTTAAGACATTGGAGGTCATCACTGGGC
GTTTTGAGTTTATTTTTCATGGGCGTAATGATCCCAATAAACCAATGAGTGAAGCAGCTATTAACCAAGTTATTAAACGT
ATCGGCTATGGTAGCAGAGCAACAGGCCACGGATTTCGCCATACCATGAGTACAATTTTACATGAACAGGGCTATAACAC
TGCATGGATTGAAACACAGCTTGCACATGTTGATAAGAACAGTATCAGAGGAACATACAATCACGCCCAATATTTGGATG
GTCGCAGGGAAATGCTGCAATGGTATGCTGACTATATGGATAGCTTAGAATACGGTGAAAATGTAATTTATAGTACATTT
GGCAAAAGAGCTTAA

Protein sequence : 
MKLNARQVESAKAKATDYKLADGSGLYLLVKKNGARYWRLKYRIAGKEKLLALGIYPNLSLANARAKRDEAKQHLANGVD
PAEVKKTKQKEIIRQATNTFEAIAKEWHSYKLPNWSVGYADDLLESFNKDIFPYIGKRIITDIKPLDMLETLRKMEQRGV
LDKLKKIRQACSQVFKYAIVTGRSEYNPAAELSGALASPKVKHFPHLLADELPLFLQTLSQYKGSIITQIATKLLLLTGV
RTIELRAAKWDELDLDRKIWEIPLERMKMRRTHIVPLSEQVLSLFKTLEVITGRFEFIFHGRNDPNKPMSEAAINQVIKR
IGYGSRATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYMDSLEYGENVIYSTF
GKRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-129 65
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-128 63
int CAC39282.1 integrase Not tested LPA Protein 1e-128 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-128 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-128 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-128 63
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-123 62
int ACU09430.1 integrase Not tested LEE Protein 1e-128 62
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-128 62
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-128 62
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-128 62
int AAD44730.1 Int Not tested SHI-2 Protein 1e-127 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-74 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-76 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-75 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-75 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-76 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-76 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-76 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-76 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-76 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-75 41
int CAC81896.1 integrase Not tested LEE II Protein 4e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAU_01003 YP_003039840.1 putative phage integrase VFG0598 Protein 4e-128 63
PAU_01003 YP_003039840.1 putative phage integrase VFG0783 Protein 7e-129 62