Gene Information

Name : ybbA (PAU_00981)
Accession : YP_003039818.1
Strain : Photorhabdus asymbiotica ATCC 43949
Genome accession: NC_012962
Putative virulence/resistance : Resistance
Product : probable abc transporter atp-binding protein ybba
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 1129401 - 1130087 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGGTAACGGGAAATATTCTTGAAGTTCAGCATCTCAATAAGCACGTTGGTCAGGGGGAACATAAGATCACTATATTGCA
GGGAGTCAAGTTGGTTGTCGAGCCTGCGCAGACTATTGCTCTGGTAGGCGAATCTGGATCGGGTAAATCCACACTGCTTG
GCATTATTGCCGGGTTGGATGATGGTAGTGACGGTGAAGTCCGGCTGTTAGGGCACAATTTAAGCCAAATGAATGAGGAG
CAGAGGGCAAAACTACGAGCTGAAAATGTCGGTTTTGTATTTCAGTCATTTATGTTAATTCCAACGTTAAACGCCTTGGA
AAATGTCCAGCTCCCTGCTTTATTACGCGGTGAGTCTGAAAATAGTAGCAAGAAACAAGCAATCGAATTGCTTGAACAAT
TAGGATTGGGGAAACGTTTGAAACATATGCCAGCCCAACTTTCTGGTGGTGAACAACAAAGGGTTGCGTTGGCTCGAGCA
TTTAGCAGCCAGCCAAAAATTTTGTTTGCTGATGAACCAACAGGTAATTTGGATCGACAAACCGGTGATCGCATTGCTGA
CTTACTGTTTTCTCTGAATCGTGATTATGCCACAACATTAATTCTGGTTACTCACGACAGCCAGCTTGCTGCTCGCTGCC
AACGTTGCTTACGACTGGTTGATGGAACATTGAGGGAAGAAAGATGA

Protein sequence : 
MVTGNILEVQHLNKHVGQGEHKITILQGVKLVVEPAQTIALVGESGSGKSTLLGIIAGLDDGSDGEVRLLGHNLSQMNEE
QRAKLRAENVGFVFQSFMLIPTLNALENVQLPALLRGESENSSKKQAIELLEQLGLGKRLKHMPAQLSGGEQQRVALARA
FSSQPKILFADEPTGNLDRQTGDRIADLLFSLNRDYATTLILVTHDSQLAARCQRCLRLVDGTLREER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_003039818.1 probable abc transporter atp-binding protein ybba NC_008702.1.4606598. Protein 2e-36 45
ybbA YP_003039818.1 probable abc transporter atp-binding protein ybba NC_012469.1.7686878. Protein 6e-39 43
ybbA YP_003039818.1 probable abc transporter atp-binding protein ybba CP001581.1.gene798.p Protein 3e-37 41