Gene Information

Name : ECBD_0876 (ECBD_0876)
Accession : YP_003035129.1
Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG
Genome accession: NC_012947
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 912070 - 912639 bp
Length : 570 bp
Strand : -
Note : KEGG: ssn:SSON_3006 hypothetical protein

DNA sequence : 
ATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACC
GCGTTTGCAGTACTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAG
GTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTC
CTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGATTGTTTTAGTCAGCGACCGCAATATGCAATCGTT
AGCTAATTACTGGCGAAAACACAACTCAGCAATATCTGCTGTCATATATAATGATGATGGTCTTGATGTTGCCAATGAAA
AGATCAGACAACTATTTATTGGTCGTTATTTATCATTTACCAGAGGTAACACATTAACTCAGATGGAATTCACCATAATG
GGGTATATGGTTTCTGGTTATAATCCATATCAGATTGCTGAAGTTCTGGATATGGATATCCGTAGCATCTATGATCTTAC
CCAGCAATAG

Protein sequence : 
MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLF
LEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFTIM
GYMVSGYNPYQIAEVLDMDIRSIYDLTQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3703 NP_311730.1 hypothetical protein Not tested LIM Protein 2e-84 98
rmbA AAD16953.1 RmbA Not tested SPI-3 Protein 2e-34 42
rmbA NP_462655.1 hypothetical protein Not tested SPI-3 Protein 3e-34 42
rmbA YP_218664.1 hypothetical protein Not tested SPI-3 Protein 2e-34 42
rmbA NP_458174.1 conserved hypothetical protein Not tested SPI-3 Protein 8e-35 42
unnamed AAO49826.1 RmbA Not tested SPI-3 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECBD_0876 YP_003035129.1 hypothetical protein VFG0567 Protein 8e-35 42