Name : ECBD_0770 (ECBD_0770) Accession : YP_003035024.1 Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG Genome accession: NC_012947 Putative virulence/resistance : Virulence Product : general secretion pathway protein YghD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3149 EC number : - Position : 795244 - 795780 bp Length : 537 bp Strand : + Note : PFAM: general secretion pathway M protein; KEGG: sbc:SbBS512_E3403 general secretion pathway protein M DNA sequence : ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGGCACA ACACCTGGCGGGGCGTTCTCCGCGTGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGTCGGATATTACG TCCTCATCTGGCAGCCGTTGAGCGAACGGATTGAGCAACAGGAGACAATATTGCAGCAGCTGGTGGCGATGAACACCCGA CTGAAGAACGCCGCGCCGGATATTATTGCAGCGCGAAAATCTGCCACAACAACGCCTGCGCAGGTATCGCGGGTCATCAG TGACAGTGCTTCCGCGCACTCGGTGGTCATCAGGCGGATAGCCGATCGTGGGGAGAATATTCAGGTCTGGATAGAACCTG TGGTGTTTAATGACCTGCTGAAATGGTTAAACGCACTGGATGAAAAATATGCGCTGCGGGTGACACAAATTGATGTCAGT GCTGCTGAGAAGCCTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAA Protein sequence : MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTR LKNAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVS AAEKPGMVNVQRLEFGRG |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
yghD | CAI43907.1 | putative secretion pathway protein | Not tested | LEE | Protein | 7e-79 | 98 |
gspM | YP_854398.1 | general secretion pathway protein YghD | Not tested | PAI I APEC-O1 | Protein | 3e-78 | 97 |
gspM | CAE85225.1 | GspM, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-77 | 94 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
ECBD_0770 | YP_003035024.1 | general secretion pathway protein YghD | VFG2056 | Protein | 8e-58 | 97 |