Name : ECBD_0768 (ECBD_0768) Accession : YP_003035022.1 Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG Genome accession: NC_012947 Putative virulence/resistance : Virulence Product : type II secretion protein GspC Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3031 EC number : - Position : 793321 - 794316 bp Length : 996 bp Strand : + Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm DNA sequence : TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATTGCACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG CAAAAATGGCGCATTCACTCTGGCGCTATATCTCCTTTTCTGCGGAATATACGGCGGTTTCTCAACCGGTGAATAAACCG AGCCGTGTGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC TGTCGCCGCGCAGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGTGGGATCGCCT TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGTAAACAGCAGGTCTATTTGCAGGGTGAAACGCTTGGCTCTCAC AACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGTTATCAGGGAAAAATAGAGCGTCTGAGTCTGGCAGA AGAGGAACGTTCCACTGTTGCTGTGACCAACAAAAAAGCCGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG TCAGTGTGCCAGTTGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGCGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG TTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAC CGACTATTCTGCCCGCCTTACTGGAAGAAGAGCTGA Protein sequence : MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAHSLWRYISFSAEYTAVSQPVNKP SRVDAKTFDKNDVQLISQQNWFGKYQPVAAQVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSH NAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSVPVEIPAAVRQALAKDPQKIFNYIQ LTPVRKEGIVGYAAKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALRY RLFCPPYWKKS |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
gspC | CAE85235.1 | GspC, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-112 | 95 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
ECBD_0768 | YP_003035022.1 | type II secretion protein GspC | VFG2046 | Protein | 2e-111 | 93 |