Gene Information

Name : ECBD_3052 (ECBD_3052)
Accession : YP_003037245.1
Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG
Genome accession: NC_012947
Putative virulence/resistance : Virulence
Product : ParB domain protein nuclease
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 3186544 - 3187161 bp
Length : 618 bp
Strand : +
Note : PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: elf:LF82_2590 uncharacterized protein YbdM

DNA sequence : 
ATGCAACAACGATTAACGCAGGATTTAACGCAATTTCTCGCCAGCTTGCCGGAAGACGATCGCATCAAAGCGATTAATGA
AATCCGCATGGCGATCCATCAGGTAAGTCCTTTTCGGGAAGAACCGGTAGATTGTGTTTTGTGGGTCAAAAATGATCAGC
TTGTGCCGAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGAAAAAATCCATTGAAATAGATGGT
TTTACCCAACCCATTGTGGTCACGCATACGGATAAAAATGCCCTGGAAATCGTGGATGGTTTTCACCGCCATGAAATTGG
TAAAGGCTCATCATCGTTAAAATTACGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGCGTAATCAACGCA
TCGCCGCGACTATTCGTCATAATCGCGCTCGTGGACGCCATCAAATCACCGCCATGTCGGAAATCGTCCGTGAACTTAGC
CAGTTGGGATGGGACGATAATAAAATTGGCAAAGAGCTGGGAATGGACAGCGACGAAGTGCTGCGCCTGAAGCAAATTAA
CGGCCTGCAAGAGTTGTTTGCCGACCGTCAATATTCCCGCGCCTGGACGGTTAAATAA

Protein sequence : 
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNDQLVPNDYNPNNVAPPEKKLLKKSIEIDG
FTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 5e-57 61
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 5e-57 61
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 5e-57 61
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 5e-57 61
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 2e-56 58
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 1e-54 57
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-44 57
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-44 57
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 8e-44 57
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 1e-54 57
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 4e-31 53
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 5e-31 53
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 3e-30 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECBD_3052 YP_003037245.1 ParB domain protein nuclease VFG1505 Protein 1e-56 58