Gene Information

Name : ECBD_2655 (ECBD_2655)
Accession : YP_003036862.1
Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG
Genome accession: NC_012947
Putative virulence/resistance : Virulence
Product : fimbrial biogenesis outer membrane usher protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 2775480 - 2778080 bp
Length : 2601 bp
Strand : -
Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_0949 outer membrane protein

DNA sequence :
ATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCTGCTTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT
TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGGTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGTGTTAATACTGATGCGTTTCCGGCTTTTAAACAACTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGG
ATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TGCGCAACAATTCAACATGGAGTCGTAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAACGGGCG
GTTATTCCTCTGAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGG
TGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAA
GCAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGT
GATCTCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGT
ACCGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATA
GTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGT
GGACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACTTCGGCGATTTCGGAGCAATTTCGTTCGA
TGCGACCCAGGCGAAGAGTACGCTAGCAGATCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCACTTGGGCACTAACTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATG
TATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTT
TTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCC
AGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTG
GGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCG
ATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAA
CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGATTACAAAGGGGCGTTTGCGGATGCCCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGG
GCATTACCCTGGGGCAATCGCTGGGGGAAACTAACGTTCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTTCCTTATGCCACTTCTTATCGGGAAAATCGAATCGCACT
TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATACCGCTGCGTTTTGGCGCG
ATAGCGACGCTGGACGGCGTACAGGCTAATAGCGGCATAATTGATGATGATGGCTCGCTCTATATGGCGGGTTTACCGGC
GAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGAACAACAAA
TTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA

Protein sequence :
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGGYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNFGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAITRMDAICR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 48
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 4e-180 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECBD_2655 YP_003036862.1 fimbrial biogenesis outer membrane usher protein VFG0876 Protein 0.0 49
ECBD_2655 YP_003036862.1 fimbrial biogenesis outer membrane usher protein VFG0446 Protein 1e-179 49
ECBD_2655 YP_003036862.1 fimbrial biogenesis outer membrane usher protein VFG1645 Protein 2e-180 46
ECBD_2655 YP_003036862.1 fimbrial biogenesis outer membrane usher protein VFG0912 Protein 4e-180 46
ECBD_2655 YP_003036862.1 fimbrial biogenesis outer membrane usher protein VFG0454 Protein 2e-171 45