Gene Information

Name : ECBD_1323 (ECBD_1323)
Accession : YP_003035571.1
Strain : Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG
Genome accession: NC_012947
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1400243 - 1400995 bp
Length : 753 bp
Strand : +
Note : PFAM: Pili assembly chaperone, N-terminal; KEGG: sfv:SFV_2405 chaperone

DNA sequence : 
ATGTCTGATTTACTTTGCTCTGCCAAATTGGGTGCTACGACGCTGGCGTTACTGCTCAGCGCTGCCAGTTTGTCTGCCCA
GGCATCTGTAACGCCAGATCGTACCCGTTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGCTGCGCAATAACG
ATCCGAAACTCCCTTATCTGGCTCAAAGCTGGATTGAAGATGAAAAGGGTAACAAGATCAGCTCGCCGTTAACGGTTCTG
CCGCCAGTGCAACGCATCGATTCAATGATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTACCTGC
CGATCGTGAAAGCATGTTCTACTTCAACGTGCGCGAGATCCCGCCAAAATCAGACAAACCCAACACCCTGCAAATCGCGC
TGCAAACGCGTATCAAGTTGTTCTGGCGACCAAAGGCGCTGGAAAACACCAGCATGAAAAGTCCGTGGCAGCATAAAGTT
ACTTTAACCCGCAGCGGTCAGGCATTTACCGTCAATAACCCGACGCCATACTACGTGATTATCAGCAACGCCAGTGCGCA
GAAAAACGGTAATCCGGCTACGGGGTTCTCGCCTCTGGTCATTGAGCCGAAAACCACAGTTCCGCTGAATGTGAAAATGG
ATAGCGTACCGGTACTGACTTACGTCAACGACTTTGGCGCACGGATGCCACTCTTTTTCCGCTGTGACGGCAACACATGC
CAGGTGGATAAAGTTCAAAGTCTCAAGGGATGA

Protein sequence : 
MSDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSDKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
TLTRSGQAFTVNNPTPYYVIISNASAQKNGNPATGFSPLVIEPKTTVPLNVKMDSVPVLTYVNDFGARMPLFFRCDGNTC
QVDKVQSLKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 4e-48 43
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 1e-48 43
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-47 43
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 1e-47 43
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 1e-47 43
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 1e-47 43
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-47 43
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 4e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECBD_1323 YP_003035571.1 Pili assembly chaperone, N-terminal VFG1547 Protein 2e-48 43
ECBD_1323 YP_003035571.1 Pili assembly chaperone, N-terminal VFG0896 Protein 6e-48 43
ECBD_1323 YP_003035571.1 Pili assembly chaperone, N-terminal VFG0885 Protein 2e-43 42