Gene Information

Name : cat (SSUBM407_0980)
Accession : YP_003028724.1
Strain : Streptococcus suis BM407
Genome accession: NC_012926
Putative virulence/resistance : Resistance
Product : chloramphenicol acetyltransferase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG4845
EC number : -
Position : 1060737 - 1061360 bp
Length : 624 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTTACCGTTATTGATAAAGAAAACTGGGATAGAAAAGAATACTTTGAGCATTATTTTTCTGGAGTTCCATGCAC
ATATAGTATGAGTGTAAAGTTGGATATTACGGAAATAAAAAATAGAAAAAAGAAATTATATCCAACAATGTTATATTTTA
TTACTACTATTGTTAATAGACATGATGAGTTTAGAACTTCATTTAATGCAGAGGGGCAATTAGGTGTGTATGATGAAATG
ATACCTTTCTATACAATATTTCATAAAAATACGGAAACTTTTTCCAATCTTTGGACCGAGTATTTTAACAAGTATGATGA
TTTCTGTGCCGCTTATGAAAAAGATATGGAAGAATTCGGAGAACTAAAAGGAATGATGGTAAAGCCGAATATTCCTGAAA
ATAATTTTCCAGTATCAATGATTCCATGGACAACATTTGAAGGTTTTAACTTAAACCTTCAAAAAGGATATGAGTATTTG
TTACCTATATTTACAATGGGAAAATATTATGAAGAAAGAGGAAGATATATTTTGCCATTAGCCATTCAAGTACATCATGC
GGTATGTGATGGATTTCATGTATGTCGTTTTGTAAATGAGTTGCAAGATTTAATCAATGGATAA

Protein sequence : 
MKFTVIDKENWDRKEYFEHYFSGVPCTYSMSVKLDITEIKNRKKKLYPTMLYFITTIVNRHDEFRTSFNAEGQLGVYDEM
IPFYTIFHKNTETFSNLWTEYFNKYDDFCAAYEKDMEEFGELKGMMVKPNIPENNFPVSMIPWTTFEGFNLNLQKGYEYL
LPIFTMGKYYEERGRYILPLAIQVHHAVCDGFHVCRFVNELQDLING

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cat CAJ77070.1 Chloramphenicol acetyltransferase Not tested AbaR1 Protein 2e-38 45
cat YP_006098370.1 chloramphenicol acetyltransferase Not tested Tn2411 Protein 3e-38 45
cat AAL08441.1 chloramphenicol acetyltransferase Not tested SRL Protein 1e-37 43
catA2 ACF06176.1 chloramphenicol acetyltransferase II Not tested Tn5036-like Protein 4e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cat YP_003028724.1 chloramphenicol acetyltransferase NC_010111.5787932.p0 Protein 2e-46 48
cat YP_003028724.1 chloramphenicol acetyltransferase CP001581.1.gene2168. Protein 1e-49 47
cat YP_003028724.1 chloramphenicol acetyltransferase CP004022.1.gene799.p Protein 4e-38 45
cat YP_003028724.1 chloramphenicol acetyltransferase NC_010410.6002590.p0 Protein 1e-38 45
cat YP_003028724.1 chloramphenicol acetyltransferase NC_011586.7045194.p0 Protein 1e-38 45
cat YP_003028724.1 chloramphenicol acetyltransferase NC_010558.1.6276004. Protein 1e-38 45
cat YP_003028724.1 chloramphenicol acetyltransferase NC_010426.6155849.p0 Protein 7e-36 42
cat YP_003028724.1 chloramphenicol acetyltransferase NC_010427.6155852.p0 Protein 7e-36 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cat YP_003028724.1 chloramphenicol acetyltransferase VFG1032 Protein 5e-38 43