Gene Information

Name : GM21_2828 (GM21_2828)
Accession : YP_003022619.1
Strain : Geobacter sp. M21
Genome accession: NC_012918
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3291960 - 3293294 bp
Length : 1335 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: gbm:Gbem_1426 Fis family t

DNA sequence : 
GTGAACACCATTTTGATAGCTGACGACGACATCGCCATCCGGCGCACGCTGGAGTTGCACCTGACCGAAGAGGGGTATTC
GGTGGTGACGGCTGCGAACGGTCCCAATGCGGTCGAGGTCGCGCTGGAGAAAGAAATCGACCTGATGCTCCTCGATCTTA
GGCTCTCGGGGATGGACGGTTTCGAGGTGCTGGGGCGGGTAAAAGAGCGCCGGCCCGAGCTCCCCATCGTGATGATCACG
GCGTACGACGACATGCAGACCGCCATCGAGGCGATACGCCTGGGTGCCATCGATCATCTGGGCAAGCCGGTCGATCTGGA
CCACCTGGACCAGGTCATCGCCAAGATCTTCGACATGAGCGCCCTGGCCCGAAAGGGGGTCACCTTCTGCGACTCGGCCG
ATCCCCCCTTCGAGCAGAACATCATGGTCGGCCGCTCGCGCAGCATGAAGGAGGTCTACAAGACCATCGGCGCCGTCGCC
GACTCGCGCGCCACCGTGCTGATACAGGGGGAGAGCGGGACGGGGAAGGAGATGGTGGCGAGAGCGCTTCATTTCAACAG
CTCCTTCAGGAACCGCCCCTTCATCGCGGTCGCCTGCGCCGCGCTCGCCCCCTCGCTTCTGGAGAGCGAGCTCTTCGGCC
ACGAGCGCGGCGCCTTCACCGGAGCGCATCGGACCAAGCCCGGCAAGTTCGAACTGGCGCAGGGGGGGACGCTCTTTCTC
GACGAGATCTCCGAGACGAGCCCCGAGATCCAGGTGAAGCTCTTGCGCTTTTTACAGGAGAGGGAATTCGAGCGCGTGGG
GGGTGTGGAAACCCTGAAGGCGGACGTGCGGGTCATCGCCGCCAGCAACAAGGAACTCTCCGCGCTCGCCAACGCGGGGG
AGTTCCGCAAGGACCTCTATTACCGCCTGAACGTGGTTACCCTTTTCCTCCCCCCTTTGCGCGAGCGCAGGGACGACATA
CTGCTCCTGGTCAAGTTCTTCCTGGGGAAGATGCGCGAGGAGACCGGCAAGAGCGTCGAGATCGTCACCCAGGACACCCT
GACCCTGCTCCAGGAGCACTCCTGGCCGGGAAACGTGCGCGAGTTGGAGAACACTATCCGGCGCGCCGTGCTCCTCTCCC
ACGGCAACGTGCTGCTTCCGGAATCCCTGCACCTGGAGGGGGAGAAGGAACAGGAGCGGCTGGCGTTGACGATCAGGCCG
CTGCACGAGGTGGAGCGCGAGCATATCGAGAACGTGCTGATCTACACGGGGTACGAGAAGAAGAGGGCTGCCGAGATTCT
AGGGATCTCCCGGCCGACGCTGGATAGGAGGCTCAAGGAGTATGGATTGGAGTGA

Protein sequence : 
MNTILIADDDIAIRRTLELHLTEEGYSVVTAANGPNAVEVALEKEIDLMLLDLRLSGMDGFEVLGRVKERRPELPIVMIT
AYDDMQTAIEAIRLGAIDHLGKPVDLDHLDQVIAKIFDMSALARKGVTFCDSADPPFEQNIMVGRSRSMKEVYKTIGAVA
DSRATVLIQGESGTGKEMVARALHFNSSFRNRPFIAVACAALAPSLLESELFGHERGAFTGAHRTKPGKFELAQGGTLFL
DEISETSPEIQVKLLRFLQEREFERVGGVETLKADVRVIAASNKELSALANAGEFRKDLYYRLNVVTLFLPPLRERRDDI
LLLVKFFLGKMREETGKSVEIVTQDTLTLLQEHSWPGNVRELENTIRRAVLLSHGNVLLPESLHLEGEKEQERLALTIRP
LHEVEREHIENVLIYTGYEKKRAAEILGISRPTLDRRLKEYGLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-51 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-51 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM21_2828 YP_003022619.1 Fis family transcriptional regulator BAC0467 Protein 8e-73 47
GM21_2828 YP_003022619.1 Fis family transcriptional regulator BAC0089 Protein 1e-65 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM21_2828 YP_003022619.1 Fis family transcriptional regulator VFG1249 Protein 2e-55 42