|
Name : GM21_2582 (GM21_2582) Accession : YP_003022380.1 Strain : Geobacter sp. M21 Genome accession: NC_012918 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3013070 - 3015013 bp Length : 1944 bp Strand : - Note : PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: DNA sequence : ATGTTCCGTACAAGAAGGATTCTGGTGTTTTTCCTCGATGTTGCCCTGATTGTCGCCGCGTTCGTTCTCGCTTTCCTGCT TCGATTCGATTTCCAAATTCCTGCCGATCAGTCCAGTGCTCTGCTGCAAGGACTTCTGATTATTTTAGTTGCCAAGCCGG TTATCTTCATCGCTTCCGGCATGTACCGCTGTATCTGGCGTTACGCCTCCTTGCAGGACGCCTACGAAATCTTCAAGGCT GTCACCCTGTCCTCCGTGGTCTCCGCGTTTACGTTCCTCTTCATGAAAGGCCCTTTCGCTCTCCCGCGCTCCATCTATTT TCTGGACTGGTTTCTCCTCTTTTCAATGGTGGCCTGTAGCCGCCTGCTCTGGAGGGTTTACCGAGAGACGAAGTTCCTCC CTTCTTTGCACAAGGGTAAGAAAACGCTGATCATCGGCGCCGGGGAGGCGGGCAACCTTCTGCTGAAGGAGATCCGCAAG GAGGCCGATTCCCCCTACAACGTGATCGGCTTCGTGGACGACGACATTGAGAAGCGCGGGATGCGTCTCTCCGGCGTGCG GGTCTTGGGCGGCACCAGCCGCCTCTGCGCCTTGGTCAGAAAACATGCCATCGAAGAGGTCATTTTCGCCATCCCTTCCG GGGACCGCGAGCTGATGCGCCGGGTGATCGCCAACTGCGAGCGGGGTAAGGCGCGGTTCAAGACGCTTCCGGGGATCACC GCTATTGTCGACGGGAAGGTTTCCATGAGCCAGATCAAGGACGTGGAGATAGAGGACCTCCTGGGGCGCGACCCGGTGCT GCTGGACCAGACGGCGATACGCAACTACCTGACGGACAAACGCGTCCTGGTTACCGGCGCGGCCGGTAGCATCGGGAGCG AGATCTGCCGCCAGGTGGCGCGTTTTAAGCCGGCGAAGCTGGTGCTCTTCGATCACGCTGAGACGCCGCTTTTCTACATC GAAAAGGAACTGGCCGCCTCCTTCCCGGACCTGCGCCTCATCCCGATGGTGGGGGACGTGAAAAATCAGGAGCGCGTGGA GGCGGTTTTCGACGAGTTCTGCCCCGAGGTGGTGTTCCATGCCGCGGCCTACAAGCATGTCGCCATGATGGAATACAACC CGGCCGAGGCGGTGCTGAACAACGTGCTCGGATCCAGGATCGTCGCCGATGCGGCTCACAAGACAAAGGTGCGCAACTTC GTCATGGTCTCCACGGACAAGGCGGTGAATCCGACAAACGTGATGGGGGCCACCAAGCGCAGCGCCGAGATCTACGTGCA GGCCCTTGCGGCGAAGAGCCAGACCAAGTTCACCACGGTCCGCTTCGGCAACGTCCTTGGCAGTAACGGCAGCGTCATAC CTCTCTTCAAGGAGCAGATCAAAAACGGTGGGCCGGTCACCGTCACCCACAGCGACGTGGTGCGTTACTTCATGACCATC CCAGAGGCGTCGCAGCTGGTGATGCAGGCAGGCTGCATCGGGCGCGGCGGCGAGATCTTCGTGCTGGACATGGGTGACCC GGTCCGGATACTCTCCCTGGCCGAGGAACTGATCAGGCTTTCCGGGCTGGTGCCGTACAAGGAAATGGACATCCAGTTCA CCGGGTTGAAGCCGGGAGAAAAGCTGTTCGAGGAGCTTTTGATCAACGGCGAGGGGATCAAGCCCACGAGCCACAAGAAG ATACGGGTGATGGCGCCGGTGGAAACCGACCTGAGAAGGGTGAGCCAGGATTTCGACGAGATGTTCGCGCATGCCAGGAA CCAGGATATCGGGGAGCTGCTGAAGGCGTTGCGGCGCATAGTGCCCGAATTCGTGCCGCGGTATGAATTCGACGTAGCAC CGCCGATGGCCTTCCAGCGGGTCCGGCCCGATCTCTTTCCTCCGCAAAAGCTCACCCTGGTGAGGAACCTGCAGTTGGCC TCAAAAGAGGGCTCCGCGGCTTGA Protein sequence : MFRTRRILVFFLDVALIVAAFVLAFLLRFDFQIPADQSSALLQGLLIILVAKPVIFIASGMYRCIWRYASLQDAYEIFKA VTLSSVVSAFTFLFMKGPFALPRSIYFLDWFLLFSMVACSRLLWRVYRETKFLPSLHKGKKTLIIGAGEAGNLLLKEIRK EADSPYNVIGFVDDDIEKRGMRLSGVRVLGGTSRLCALVRKHAIEEVIFAIPSGDRELMRRVIANCERGKARFKTLPGIT AIVDGKVSMSQIKDVEIEDLLGRDPVLLDQTAIRNYLTDKRVLVTGAAGSIGSEICRQVARFKPAKLVLFDHAETPLFYI EKELAASFPDLRLIPMVGDVKNQERVEAVFDEFCPEVVFHAAAYKHVAMMEYNPAEAVLNNVLGSRIVADAAHKTKVRNF VMVSTDKAVNPTNVMGATKRSAEIYVQALAAKSQTKFTTVRFGNVLGSNGSVIPLFKEQIKNGGPVTVTHSDVVRYFMTI PEASQLVMQAGCIGRGGEIFVLDMGDPVRILSLAEELIRLSGLVPYKEMDIQFTGLKPGEKLFEELLINGEGIKPTSHKK IRVMAPVETDLRRVSQDFDEMFAHARNQDIGELLKALRRIVPEFVPRYEFDVAPPMAFQRVRPDLFPPQKLTLVRNLQLA SKEGSAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 7e-104 | 49 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-102 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| GM21_2582 | YP_003022380.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-101 | 47 |
