Gene Information

Name : GM21_2109 (GM21_2109)
Accession : YP_003021919.1
Strain : Geobacter sp. M21
Genome accession: NC_012918
Putative virulence/resistance : Resistance
Product : sigma-54 interacting domain-containing protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2451221 - 2451901 bp
Length : 681 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2109 ABC transporter

DNA sequence : 
ATGACAATCCTGCAAAGCCAAGAGGTCAGCAAAAGCTACCGTATCGGAAACCGCTTGATCAAGGTGCTCGACTCCGTCTC
GCTGACCGTTGAGACCGGCGAGTTCCTGGTGGTGAAGGGGGAAAGCGGCAGCGGCAAATCGACGCTGCTCACCATTCTTT
CCGGGTTGGACCGCCCGGATCAGGGAAGGGTCCTCATCGGCGGGGAGGACATCACCGACTTGGGCGAAGACGCCCTGGCC
CCCTTGAGAAACAGCGCCTTCGGCTTCGTGTTCCAGTCCTTCCACCTGGTCCCCTCCCTGAACGCCCTGGAGAACGTTAT
GTTCCCGGCGGAGCTCAAAGGGGATCTCGAAGCCCGCGCCAAGGCCGAGGCCCTCCTGGAAAGGGTCGGGCTTTCCGGGA
GGCTCAACAGTTTCCCGCACCAGCTCTCCGGCGGCGAGAAACAACGCTGCGCCATCTGCCGCGCCCTCATCAACGACCCG
CGCATCGTCTTCGCCGACGAGCCCACCGGCAACCTCGATTCCATAAACGGCGCCGCCATCCTGGAGCTGCTCTTGGAACT
GCAGCGCGAACGCGGCACCACCCTCATCCTGGTGACGCACAGCCCCGAGATCGCACAGCGCGCGCATCGCGTGGTCACGC
TCAAAGACGGCAGGATCGTCACGGGGGAGGAGCATGGTTAG

Protein sequence : 
MTILQSQEVSKSYRIGNRLIKVLDSVSLTVETGEFLVVKGESGSGKSTLLTILSGLDRPDQGRVLIGGEDITDLGEDALA
PLRNSAFGFVFQSFHLVPSLNALENVMFPAELKGDLEARAKAEALLERVGLSGRLNSFPHQLSGGEKQRCAICRALINDP
RIVFADEPTGNLDSINGAAILELLLELQRERGTTLILVTHSPEIAQRAHRVVTLKDGRIVTGEEHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GM21_2109 YP_003021919.1 sigma-54 interacting domain-containing protein NC_008702.1.4606598. Protein 1e-30 46
GM21_2109 YP_003021919.1 sigma-54 interacting domain-containing protein NC_012469.1.7686878. Protein 6e-36 44
GM21_2109 YP_003021919.1 sigma-54 interacting domain-containing protein CP001581.1.gene798.p Protein 2e-36 43
GM21_2109 YP_003021919.1 sigma-54 interacting domain-containing protein CP001581.1.gene598.p Protein 4e-41 42